RNA id: XM_036957753.1


Basic Information

Item Value
RNA id XM_036957753.1
length 3411
RNA type mRNA
GC content 0.51
exon number 13
gene id arhgap36
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37958017 ~ 38050782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgggtgggggggACCACACAACAACAACCTCATACTGGGCTCAAGCTGTCTCTTGACTGATGGACAACTCTACACATCAACAGTTACTGTCTAagcagtgagaggaggagaggataggaaagAGAGGAGCGCTAAAGAGAAGAGAGTCAAGGAGGCTCACCTCGGTCCCCTCTCTGAGGAGAAGAAAAACAATTTTTTAGTCACTGATGGAATATCTTCTTCAGTGATGCAGATGGAGCAGCCTGTGCGGCAGGAcatgcagttctactacgtggggGACCATACGTGGGCGACCATGCTGGGCCAGAGTGTGCGTCTGCAGCCGGTGCCTATCCAGAGCCTATCTGAACTGGAGAGAGCTAGGCTGCAAGAGGTAGCCTGCTACCATCTCGGGGAGCGGGACCTTGACTTCAACATCAGCATCCCCAGAGAAATCCGTAAGAGGAGAAAATCGCTCAGAAGGAAGTTTGACTCCTTCTCCaaagaaaagaaagagaaagagcgagAGACAGCCGCCAAGGCGTTTGGCATACCTCTTTCGCAGGCGATAGCCAACGACCGGGCATACAAGCAGCGTCAGGATGCTCTGAagGAGAGCCGGAGAGACTGCCTTGATCTAGAGGCCAGCGTCCTGAGGTTCCGGGCTGAGAAACAACAGCAGAGCAACGGGAATAAACCCCTCTGTAGCACGGCTTCATCCCCCTTCAGTGGTGCTACATCCTCCTCATCATCGGCAGCACTGGCGTTGCACAGCAAGCCACTCTCACCCAGGTTCCTGGATAAGAAAGCTAGAGTGCAGAGACGGGGTGGCCTGTCAGTGGACTCCATCTCAGATCTTGTAGAGAGTCAGTCCCGCCTGTTGGAGGCGCTGCAGCTGTCCCACCCTGCAGAGCTGGAGCTGAAGAAGACTGCAGCAGGTGCCGGGGGGCGGACTCAGACCAAGTTGAGCCTCAACCCCATCTATAGACAGGTTCCCCGTGTGTTGGAGAGGTGCTGCTGTCACATAGAGAGACACGgTCTACAAACTGTGGGGATCTTTCGTGTTGGGAGTTCCAAAAAGAGAGTTCGGCAGCTGCGTGAGGACTTTGACATAGGGACAGACGTGTGTTTGGATGAAGAGCACAGTGTCCACGATGTAGCGGCATTACTGAAGGAGTTCCTCAGAGACATGCCTGACCCTCTACTGCCAAGAGAGCTCTACGCTGCCTTCCTACACGCCAACCttctgcGAGGGACAGACCAGCTAATGTACCTCCAGCAGCTGCTCTACCTGTTACCCCCCTGTAACTGTGATACCCTGCTCCGCCTCCTCACCCTGTTACACACCGTACAAAGCCACGCACAGgacaccacaggaccacagcacCAGGAGTTCCCCGGCAACAAGATGACAGCAACCAACCTGGCAGTGATCTTTGGTCCCAACCTGCTGCAGGGGGAGAGGGGCGGAGGGGACAGGGAGATGAGTCCCCACGCCATGGGCATTGAGGACAGCGCTGCCATCATCAACGTCACCCTTCACCTTATACAGAACTACAGGCGACTGTTCACGgtgTCAGCAGAGCTCCAGCAGGAGGTATTGATGAGTCTCATCCAGACAGATCCTGACATCATCGACTATCTCCTCCGCAGGAAACTCAGTGGCAGTCACCTGACGGTGGAGACGGTAGACACAGCGGGGGGTCGGCGGGACACGGGGGCATCTCTGGACTCGGTAGGGGCGTCTAGTGGAAGCCTGTCACCCCTGGAGCCATCGCCCCTCTTCAACCCCGACGAGCCAGGGGACAGCAGGCTGACCACAGAGGTGTTCCTCAACCTCAACGTCCTCCAACGCCACCATAACAACAAGAAACGTTCCAACGAGACCCCGTCCAAGTCCATTGGTCAGATGAGACAGTTCCACTCCCACCACAACCTACTGAGTCTGGCCCAGCCCTCCAGTAGCTCCAGAGTCCACCCAGAGGACAGCCAACACCATGCCCAGGAACGGAGGATTCCGCTGGGCGAAGGTCTGAGCTTCACCCTGGGGGCTGCCTCATGCTCCAGCCTGGGAGGACAGGGGGAAAACAGTATCTGGGTGAGGCAGACACcccaggaggagaaagagaaaccCTCTCCTAGTCATACAAGTCATTTTTGGGACTTCTTCACAGGCAAGGGCTCAGGGTCTGAGACCATGGTATGACAGGATAgaacactggggggggggggggtggattggGACTAGAAATGGTTGGATTGGCCCACCATGCCTTTGTCTGGTCTGCCATATTGTCATTTCTGGGTGGCTGGGAGGTGGTTGGACCACGTTGAGGGACACTGATGTAGAGTAGTGTTTATACGTATTCATACGAGTGCAAACGTAGACCGCACACACATTGTTGTAACGTGTGAACTTATATTTTTTACTCTAGCGCCTATCCCCTTCCCCTCTATCCCTCAACTTATCCATGATCTCTCGTGATGCTACACTGAGCTCCATCCAAACAGCCAGAAAAAAAACATCAGTGGCTGTATCCTTTATGATCATCTATATTATGAACCCTCTGTTGGGTAACTGAACACTTAATGTTTGATACGGCTGAAGACCAAGGAGACGATGGGCAACACACTGTAAATACATAGTGTTTTAAACCGTGAAGACTATGGGCTCGATTCATATAAAGTTCTGCGTTGGAGCCTGATTGACATTTTAAAGACAACGTTCCCATGCTAGCCGAGACTGCATTCACCGTTAaccgctgcatatgtcggctcaatcgggaAATTAATTCAATCCCAAGTGCTTTCTCGAATCTCATATATTGGGTTTGAAACATTGGTTGCCATGACAAAGGTGACATTTTTCATATGTACAGAAAAGTATATTCAATGCGTTTGCTTCATCTTCTGGTGAAAGGTCACCCCACACATCATTTCTGTCTGGAACTTATCACGCTTCACAGGACTATAGTAATTAACTACCGGGGACAATGTGGCCATGTATTCAATAACTAAAGAACTACCTGAGAATTCAATTGGGCTTGAGGATTGAGACAACTTCTTATAGTAAACCTGTCCCTACCATGTAAATGCAGTATTGTCTGTTTTTTGTATGTATATAAAAAATGTAGGCTTGTGTGCATCCAGTCTCTGTATTTGTTCTGGACCTTGTTGAATTGCAGTATTGATATCCAACAAAATACTTGTTCCATGAGGTGCTTGCTATCCTGTAAATATTAATCTCACTCTTgtaccattagacagtatgtgcAAATTTTTTTGGGGCAATACTTTTCTATACTTTGTAAACAAGCAAGCAATATCCCCTCAAGGTGTAGCTAGATTTCAAACTGTCTATTTTCTTACAGGTGTTTCTTGTATCTTGGAATGCATCTATGTACGAGATTTGAATTAAATGTACAATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986845 lncRNA upstream 51237 37906577 ~ 37906780 (+) True G1734878
TU1986844 lncRNA upstream 52993 37904622 ~ 37905024 (+) True G1734877
TU1986830 lncRNA upstream 69292 37888524 ~ 37888725 (+) True G1734864
TU1986764 lncRNA upstream 168236 37789405 ~ 37789781 (+) True G1734802
TU1986706 lncRNA upstream 192482 37763412 ~ 37765535 (+) True cited1
TU1986817 lncRNA downstream 301 38051083 ~ 38056244 (+) False G1734853
TU1986818 lncRNA downstream 301 38051083 ~ 38056244 (+) True G1734853
TU1986973 lncRNA downstream 24972 38075754 ~ 38076214 (+) True G1734980
TU1986974 lncRNA downstream 25681 38076463 ~ 38076967 (+) True G1734981
TU1986938 lncRNA downstream 36649 38087431 ~ 38087888 (+) False G1734959
XM_036957749.1 mRNA upstream 4797 37801058 ~ 37953220 (+) False nhsl2
XM_036957750.1 mRNA upstream 4797 37812660 ~ 37953220 (+) False nhsl2
XM_036957751.1 mRNA upstream 4797 37893983 ~ 37953220 (+) False nhsl2
XM_036957752.1 mRNA upstream 4797 37920291 ~ 37953220 (+) True nhsl2
NM_001165051.1 mRNA upstream 185063 37766654 ~ 37772954 (+) True rs4x
XM_021577605.2 mRNA downstream 26201 38076983 ~ 38083972 (+) False LOC110500301
XM_021577652.2 mRNA downstream 82277 38133059 ~ 38166964 (+) False LOC110500338
XM_036957757.1 mRNA downstream 244648 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA downstream 244648 38295430 ~ 38482345 (+) False col4a6
XM_036957760.1 mRNA downstream 244648 38295430 ~ 38482345 (+) False col4a6
TU1986710 other upstream 194759 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 389064 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 586350 37370957 ~ 37371667 (+) True G1734420
TU1986149 other upstream 705842 37248627 ~ 37252175 (+) False zgc:109889
TU1984969 other upstream 1199134 36756989 ~ 36758883 (+) False G1733187
TU1986976 other downstream 26769 38077551 ~ 38082274 (+) True LOC110500301
TU1987950 other downstream 817185 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1128505 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 1182882 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1824974 39875756 ~ 39876950 (+) True G1736484

Expression Profile