RNA id: XM_021577605.2


Basic Information

Item Value
RNA id XM_021577605.2
length 3007
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110500301
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38076983 ~ 38083972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATGTTGGGGAGGGGTGTGCATTTTATTTTATGACACCTTGAGTTGGTGAAGTATATGAATcctacatggcaccctattccctatatagtgcactactttggtccATGGACCAATAGGATTCTgttctgaagtagtgcactatataggctacggaatagggtgccatttgtgagaCAAAAACACGTATTTCAGTTCGGAGTTGTGCCTCTTCAGCAACTCTAGCCTACTCAttcttctctctcatccctctccgactgctctgtctctcttctctcactaGTCGAACCACTGCTGCGGGCTCTGGAACAGGAGGGATAGActtgtctctcttctctcactaGACGAACCACTGCTGCGGGCTCTGGAACAGGAGGGATAGACTTGTGGACTATTTGCTGCTCTGTCTCGGTATACTTAGCCAACGTGAAATAACCGGGACAATATAAAACCTACGGTCAAATAACGGTTCTGGTCAGGGTGCGCCAAAATAACTGGATTCTGTCAACTTGTTGCGCACTCAATGCAGTGGAACTACAAGTGGTAATTAGAATTGTTTCGAGTAGCAGCCAAAGTGGACGATTATAATTTCAGTTATCATCATGGGCGAGACACACTAAGCCTCAGCTCCCGAGGCTCAGGATTGTTTTAGCAGTGGGGGGACGAAGACGAAGAGAGAGGCACTGCATTCCCAGACTGGACCGATAAGGACTCCTAAATGCGTCTTCCTGTTGACCCAACGACAACAATGAATAGTGGTTCTAGCAACTTTCTGCTAGTTCCAATACAGGAGTATCCCGTTCTAGACTGCGTACCCAACAAAAACGTCAAGATCGTGGTTTTGGGAGCGAGCAACGTGGGGAAAACAGCGTTGATAGTCAGGTTTCTGACTAAGAGGTTCATCGGGGACTATGAGGCAAACACAGGGGCCCTGTACTCCAGAAAGATCAATCTAGATGGAGAACAGGTTTCACTACAGGTTCAGGACACGCCCTGCGTCTCTCTAcagGACGATGCAGAGGGACTTTATTGTCAGGAGCAGATCAACAGGTCTATCTACTGGGCGGATGGATACGTCCTGGTCTTCTCCATCACAGATCACAGCAGCTATAGAACCATCCAGCCTCTCTACCAGCACGTCAGACGCATCCACCCTGCAGGGAATATACCTGTCATACTGGTGGGCAACAAGAGTGACCTCCTCCGTGCCCGCCAGGTGCCAGCTGATGAGGGAGAGACTTTGGCAGCCTCTCTGGGTGGTGCGTATTTCGAGGTCTCTGCCCGGGAGAACCACGAGGGGGTCCACTCCGCCTTCCTGCACCTCTGTGGCGAGGTGAGCCGAGCGCTGGGTGGGGGGAacggggagaagaggagaggggggctgCACCTAGCCCGGCCTAAGTCCCCCAACATGCAAGAGCTCAAAAGAAGGTTCCGACAGGTGCTCTCTTCCAAGGGGAAGTCTTCCACTACCACGCTGTGATGATAATGGAAAAAAGAGATGGTTCTGGTTCTGACGGTTCTAGTTCTGGTTCCAGAATTGGAATTATGGATTTAGCCCAGTTGACTCTCTTGTGATGTCATTGTATGAGAATAAATGTAACAGTTTCAATTGGAACACAGAGAAGAGATAAACGGTTCTATATTCTATTTCATTCTATTGGAATGGAACATTGAGATAAGGAAATCTATATTCCACTTGCGGAAGGAATGGCACAGAGACAGCAAGACCAAACGCTTCCAACAACGGAGTGGGCTTCGTTGGTATGTGACGTCAAGAAGCCTGTCTGCCGATTCAACCAATGGTGACTgaggagactgaaaaacagactACGACTGACAGGTCTAACGGACCATTCGTAGGCTTCTCTGAGATCGCTATTCGTACTAAGCGATTATGCAGTAGTCAACTCTCCTTGCTTTTGATACATTTGTATTTAAATAATGTAATCTAAAATAAACTGTACCCAGAGGCAAAGAAAAATGATGTTGTCATCACAGATTACCTATAATGAAGGGACACTTCATCTCTAATGGCATTCTACGAGCCCTGGTCAAAGGTTGTGCTCTAGGCTATGTTATAGTAGAGTGCCATTAGAGATTGAACCTATGTATTTTCTCAATGAAACATTTCAAATGGACGGGCCATGCTTAATTCAATTGAATTGCTAAAAAATGCGCTCAACCACAGTCCTTGACATCCTGGTCTGTACTAATCTATACCAGCTTGGTTCCCCTGAACAGTCACGAACCACAGGATCCGTTTACCCTACCCCAACCCAACTTCAACCATCATGAAGGCAATAGATAAAACAGACCACAGACCAGTTCTTAGGGGAAACTCCATCCTACATCAAACCACTGTGATGCCTATGGCTGCAAAAGTcggttggaagattcctggaatcaggagggaataagcaggacaCTTTGAATCCTTCAACCAGAATTTCAGAAAAACCTGGGAATTATTGGAAAAATacaggaattttgcaaccctactcagGCCTCTTTAAGGTAACACATGTGGAGGCTATGTCCTACAGATGtatctttctgtctgtgttttttaatatgagtctggaaaggGAGAGACTTGGGgtgcgtcctaaatggcactgtattccctatatagtgcactacttttgaccagagcccatcaaaaggaatgcactatatagggaacagggagccatttgggatgcaaccacgAGTTCTCATGACCTTTCACCTCTATCTGCTGTGTCAGAGTTTAACACACACCAGAGCAGGGATCACCCACTAGATTCAGCTGAaggctgattttttttttcttgagcgaatggtcagggggccggaacagaattacaaataatttgaaaaacGCAAATGCTGTAGACCACAAGACTcccaaacatatataatatatcaaaccttgtttacatttgtatacaatcacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1986974 lncRNA upstream 16 38076463 ~ 38076967 (+) True G1734981
TU1986973 lncRNA upstream 769 38075754 ~ 38076214 (+) True G1734980
TU1986817 lncRNA upstream 20739 38051083 ~ 38056244 (+) False G1734853
TU1986818 lncRNA upstream 20739 38051083 ~ 38056244 (+) True G1734853
TU1986956 lncRNA upstream 28995 38047451 ~ 38047988 (+) True G1734963
TU1986938 lncRNA downstream 3459 38087431 ~ 38087888 (+) False G1734959
TU1986941 lncRNA downstream 3556 38087528 ~ 38087888 (+) False G1734959
TU1986942 lncRNA downstream 3556 38087528 ~ 38088046 (+) True G1734959
TU1986981 lncRNA downstream 6362 38090334 ~ 38090968 (+) True G1734988
TU1986982 lncRNA downstream 8014 38091986 ~ 38092225 (+) True G1734989
XM_036957753.1 mRNA upstream 26201 37958017 ~ 38050782 (+) False arhgap36
XM_036957755.1 mRNA upstream 26201 37958017 ~ 38050782 (+) False arhgap36
XM_036957754.1 mRNA upstream 26201 37993101 ~ 38050782 (+) True arhgap36
XM_036957749.1 mRNA upstream 123763 37801058 ~ 37953220 (+) False nhsl2
XM_036957750.1 mRNA upstream 123763 37812660 ~ 37953220 (+) False nhsl2
XM_021577652.2 mRNA downstream 49087 38133059 ~ 38166964 (+) False LOC110500338
XM_036957757.1 mRNA downstream 211458 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA downstream 211458 38295430 ~ 38482345 (+) False col4a6
XM_036957760.1 mRNA downstream 211458 38295430 ~ 38482345 (+) False col4a6
XM_036957761.1 mRNA downstream 211458 38295430 ~ 38482345 (+) False col4a6
TU1986954 other upstream 30477 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 31917 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 313725 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 508030 37565428 ~ 37568953 (+) True G1734479
TU1986313 other upstream 705316 37370957 ~ 37371667 (+) True G1734420
TU1987950 other downstream 783995 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1095315 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 1149692 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1791784 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1978734 40062706 ~ 40063325 (+) True G1737353

Expression Profile