RNA id: XM_021577652.2


Basic Information

Item Value
RNA id XM_021577652.2
length 8606
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110500338
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38133059 ~ 38166964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCCGCTCTGTAGAGAtatgtagagagggagaaggggacagattgctagccagctagcttggATTCTAACGATTATAGAAACGTGGATATGTTGCACAGGGGCGGCTTTATTTCAGAGGCCTGGACCGGTCGTTTTTAATTTAACAATCTGACATTTTTGTTTTGATTGTAGCCAACCATCGCGCGGTGTAGCCACCACATTACAGCAGCGCCAGCCAGAGTCCGTCTCCTAAACAAGAATGGGGTCTAGGTCCACAGCACTGCTTAGGTAAAGTGACCTTTGGTTGTGTTCTATAAATGGCCAATTTGATGAATTACCAAGAAAACAAAGCCGCTATGTTGTTGGTGGAGACGCAACAGAGGGGCATCGGGACGACACCAGCGGCTACGGCAGCCAACGGCTACACCTCAATTGGGGAACCCCCTTCCCCGTTATTGAATATCTGCGGTGGTAGTGGAGCTCGTTTTCATCAGCACATGCCGCCCTCCAACCACCACAGCCACCATCACTACCCCCAGAGCTCGCTGCCCAAAGAACAACGCCCGCTGTTGCACCACTATCCGGCGGCGACACAGCAGCATACTCTCTCTGGTGAAAACATCCCAGGGTCCCCGGTAAGGAAAGCCTCGTTGTCGTCATTGAACCTGGTACATGAGGACCCCTCTGCTAGCCACCACGCACTCGCTGCATCGGTGAACGCGGCGTCGGCTGCAATTCAATTGGCTGCGAATGCTAACGTTAGCGTCGCTACCTCAGGGGTCATGGACGACATTCGGAAGTGTGGCTACCTACGGAAACAGAAGCATGGACACAAGAGGTTTTTCGTTCTGAGGGTGGCGAGCCACCTAGGCCTCAGCCGGCTGGAGTACTATGACAGCGATAAAAAATTCCGCAGTAGCCTCCGGTCTTCAGCAGCAGCCCCGAAACGGGTGATCTATCTGTATCAGTGCTTCACCGTCAACAAAAGAGCGGATTCCAAGAACAAACACCTCATAGCCCTCTACACTAAGGATGAGTACTTTGCCATTGTGGCTGAAAACGAGCAGGAGCAAGAGGACTGGTATGTAGCCCTGAGTGAACTAATGAGTGAGGGGAAAAAGGGGCATCTAGACTCTGACGAGTTGGATGATGGCTATGGTACAGTCACACCAGGTACGGTTTTCAAAGAGGTGTGGCAGGTGAATGTGAAACCCAAAGGTCTGGGTCAGACCAAGAACCTCACAGGTGTGTATCGATTATGCCTCTCTTCTAAAACTATCCATCTGGTCAAACTAAACTCTGAGACACCGTATGTCAACCTCCAGCTAATGAACATCAGACGATGTGGACACTCAGAAAGCTTCTTCTTCATCGAGGTGGGTCGGTCATCCTCCATAGGACCAGGGGAGATATGGATGCAGGTAGATGACTCTGTTGTGGCTCAGAACATGCACGAGACCATCTTAGAGACCATGAAGGCTCTGAAGGCCTTCGCAGAGATCCGCCCTAGGAGTAAAAGCCAATCATCGGGCTCCAACCCCATGGCGTTCATCACCACCCGCCGTCACCTAGGCAACCTGCCGCCGAGCCAGACGGGTCTCCAGCGCCGCTCCCGGACCGAGTCGGCGGTCGGTACGCCACCATCGAGTAAGAGCTCCGGTGCCAGTGGCTACCGCTTCAGGACGTCAAGTGAAGGTGAAGGGACGATGAACCGGCCATTCCGGTCTGTTACCGGCAGCCTGATCCACCTGAACACCGCCCGGATACACCTAGGGCGccaggagggtgggggaggggcaGGGAACACCGGGGGAGGAGGGCGCTACGCCAGGGCGCTACCGGGCTCCAACAGCCACACCCGCTCCGCCTCGCTCCCCGTCTCCCacttctcctccaccacctcccctgTTAGTGTGTCCAGCAGCAGCGGTCACGGCTCAGTCTCTGACACCCTCACCCGGCCCTCCAGCTCGTCCATATGCGGCTCCCCCTCTGACGGAGGCTTCAACTCCTCAGACGAGTACGGCTCAAGCCCCGGAGACTTTCGATACTTCCGAGTCCGTAGCAACACACCCGATTCGCTGGGCAACACCCCACCAATCAGAGAAGAGAACTGCCTGAGTGACTACATGGCCATGGGCTGGCACCGCGAGGTGTTTGGAGCGGGCGGCGTGAGTAGCTCTGGCGGTGCCGAGGCCCCCCACCGGGACGAGAGCACGTCGACGGACGAAGACCGGTCTCTGAGGCGGCGGACACACTCATTCACGCGGCCCGGCAGTCAGGGTGGTGTTGCCGGCGGTAGCAGCTGCGTGGCTGTGTACCAGAAGATGACCCAGACCACCTTCTCACAGGACGAGTTGGTGTCTGTGGAAGAGGCTCTGTCTCTGGGACGCACCGGCAGCAGCAACCAACCTTCCTCCACCTCGTCCTCCCTCCGCTCCGACTACAGCTCCTGCTCCGAGCACAGCCAGGGCAGaccccctcctctttcctcctaccCCTCCTCGGCCAAGGAGGACAGTGGCTATATGCCCATGTTGTGTGGGGTGGCAGCCTCACCCCGTGACACCCCGGATTACATGCCTATGCAACCTAGCTCCCACTCTCATCCCcatcaccactctctctcacaccctccccATCCCCAGCCCTCCCACTCCCCCCAGGCCTCTAGCCCAGCCTTGGCCCCACGCTCGGCCCACCAGCTCCAACAACACCAGCCTACGGACCCCCAGGGCTACATGATGATGCTACCAGGGGGACCGAGCTCCTCTTCTCCAGTCCAGGCCTCCCCAAGTCcccacagcagtagcagtaacatgGGTCTGGGTGTCGGTAGTTCTGGTAGTATAGTGGAGCGGCCTGAGACTGGAGAGTACATGGACATGTCGTACAGCAGTGGAAGAGGAGGGAACGCGACAGGAGGACGGAAGCTCTCCAATGAAGGAGGATACTACACACTGAGCAACCCTGAAGGTACTCCTAAATCATACAGTCCCTACTTCTCCTTGCCTCGCTCCTACAAGGCCCCCGTCGCCAGAGATGGTGAACAGAGAAAATGGGAGCATGAGGAATACGTGCCTATGAGCTCCCCGGCTAAACCCATCTACTCCCAGGTCACTGGCGTTACGACAAAGGGTTTCAGTAGTGGGGGGTCAGACGCCCACCACCCCCCGCCCTACGGTGCCCACCACCAAGCAGCTCGAGGTGACCGACGAACGACTGCGGTTCGGCCCAACCGCCTCCCCTTGGGCCGCCACAGCGTCCATGGGTCGCTGAGGGTTAGTGAGCCAGCTGCTGCCGAGGGACCCTCCAGCCCCGGCGAGTACATCAACATCGAGTTTGGGGATCCCTACGGACCCCTCACATCCTGCCCTCTCTCTGACCAGTACGTCTCACCCTCGATGGGCTCTGCCGAGCAGCGTCACTCCCCTCCCCAGAACCAGGACTATATGAGTGTAGTGGTTGGAGGTGGGCGTGATGATGGTTGCTGCCTGACTAAGAACCAGTCTCCCAGACCCTCTCTGGTGGCCCCATGGAATCCACCCAGCTACATTAGACCGCTGACTGCCAATTCCTCCCTGAGCGGATCTCCTGGCTCTTCTGGCGCTCACTGGCGGACGGGAACAGATGACTACACAGATATGACCTTTAACCTTAGCAAAGATGAGGGGTCGCGGGGGTCACAGAGTAGCCCCACAGCTATGCTGCAGCACCTGTGTGTGATGGAGGGCCGGTACCCCCCTACCTTACTCCCCCACACCATCAGCCCGCCCTCATCCTTCATTCCCCAGCCTGAGCCCCCCAAAGTGGTACGTGCTGACCCCCAGGGGAGACGCAGACACAGCTCTGAAACCTTCTCCTCCACCCCCGGAGGAGGCAGACCCACAAGCTCCACCACCGGCACCAATCCCCCCTCGGGCTCAGCCAACCCCTCGGCCATCAACGGAGCTCTCCCGGCCAAGGGCTCCAAGTGGGCCAGCTCTGGCTCCTTTGATAgcgtgtggatgtgtgtggaggggataggggtagatTTGGCTGGTTTCCCTGCCCAGCCTGGGCCCTCTGATCTGGGCATGGAGTCAGCCTCCTCTGGGGGCCCTCCTGGAGGACATATGTGCAGAAATGGGTCTGTGGGATATCAGAACGGCCTCAACTACATTGCCCTGGAGCTGAGAGAGGACCAGGAATCTAACACACTCCCCATACCGCAGCAGCAGGGGGGAACCGGGCCGACACCCAATGCCCCCTCAGCTGGTAATGTGACTGTGCCGGTAGCGGAGAACAACGGCGCCTATGCCAGTATAGACTTCACCAAGTCAGACGGGATGACTGCCACGTTCACGGaatgAAGCTGGATGGAGGGATCTGATCTGAGATGGGGTTTCTGTGGTGTACCCCTCTAACTACATCCCTCCACCGCCACCCTTTGACCTCGACCCCAAGGCTGGCCCTCTGCCACCACCCTTCAACCTCGACCCCAAGGCTGGCTCACAAGGTCACGCCCCCTTTGAACCACAACACCACGAAGATGAAGACGGAAGGCGCTCGCATTTTAgtcttcatatatatatatatatatatatatttattattttttgtgttttttttctgtttCGTCAGTGGCTGGTTTTGACGCTGCTCTCTCTCGTCGTTAAAGGACTTTAGATATAAAAACATTATTTCTGATCTACAGCACAAAAAGGGAGCTTCGCTCAAACATGGTATCGCTGtaagttaataataataataatagccaaATAATAATACAACTCTTAGACTGGGTTGAGACTGGTCAGTAGAGTTTACTCTAAAGTATTACTCTTATCTTAGAGTTTACTCATCTTCTCACTGAGAAACTGCTACATGTATTTAAAGCCACATAGTGCATTTGTTATCCTGACATGGTTTATTTAGTATTTTTCTATTAGCAGAAAAGGGTACTGGACTCGACGATAGTCCCAATATTTTCCATAGAAGACGCAAGTACTTTATTTCCACTCAAGGGCCTTATTAGCACAGGTCTGGCTCACAGATGTATGgagatatatacacatacacactttcaCTTGTCTGTGCTCTTTAGGCTACAGTCAGGGCCGTAACCAAGGTTTTTGTGAGGTCTGGATTTTTTTGAGGGGGTGGGCGTTgaagctcatttactgcatttctgTACAATTCAAAAAAAACTATTTGTAGAACAGCAAAACAAGCAAAAATGACCACCGctattatcaccttggctgctgtaggttcattcattcacctcagtcgatCTACAAACGTATATTAGCTATACAATTGTAATGTTATATCCCTGAAAGGGGGGTGAAATAGGAGGAATGATTCAAACTGACACAGCATCGGCGACTGAGTCAGTTGTAATGATGAattgcagaaaatcacatttttacttCTCTTTTCTCAAATTACATAGCATTAATGTTTGTATCCCTAGGCATTACTAATCAAGCTCTGCACAAACGCATCAAAGGAGCACACCGATCGTATTATCACATGCACATGAATTATTAGTATATTATGATTCTGTTATGATTCTGAtatcagtgatgtagtggtaaataaaaaaagttctcatttaccaATATAAATGAGAACGTATGTCATTTTTAGTGTACTGTATTTTCATTTCGATTCGAATGTAATGTCGGCCTAGGCCTGTAGGGAAGATGGGccatgtggagatgttcatattgaaacatatATATTTTAAGTTCCTAACCTGTTTAAAAGATTAGTACAGATTTTTCTCAGGGGGGCCCAGacccaagtttgggaaccactccTCTGCTTCCATTGCAGCCTGCCTCAACCTTAACACTTGAGTGCCACATCACTGTCTGTTTCAGTAGCCTACTCTCTGTAAAGCAAAGTTATTGTGAGATCTTAacctatttttttgttttttgctcCTGTTGAGGTCGGCTTCGTTTAACATTAGCTTAATCCTTCTAGCTGGTCCTCGGCCTGTGCCACAAGAGGGCAAAGTTAGCCGTTTGAGAGCGTGGTGAATGTGCTGCTAAAAAGGAAAATCCGGGGAGGCAAATCCAGGGGACGCAGGCGAACATAACGAACAAACCACTGTTCCTGATTCCACTCGTTCGCAAAGAAGCCGGCGTGATTTAAAAACAGCCAGATCAAGAATGTAAGTGTTCTGAGCTTTGATCAATGCTGAAAGCAATATTCAGATATTGACCCataatatattatttttattagaAAGAAAATGAGAGGTCCGGACCGCTGTGTCCTCATGCAGTTACGGCCCTGGTTACAGTGACTGACCACACACACGATGCCCCCTGTTGCAGTGACTGACCACACACACGATTCCCCTGTTGCAGTGACTCCACTAATCCACCAGTAAGTGTGCTGGGTGACACACGGGGCTGGGGTGACGTTAGGGGTTCCAGTAACCTgactctacacccccccccccccccccccctcccccaaggtGCAACATACACACACCGCTGCCAGCCCCTAACTTCCCTGGTTACGCACCGCTGGACCCCTCCCATTGCCAAGCATGTAGGCTGGCTGTAGTGAGGGAGAGATCGCAGGGGAGTGAGGGTCTATTCTCGGCCTAAACTGGGAGCCACAAGAACCAGTTCAGAGAGGTTTTCAGGATATGACAGTAAGGCACAACTAAGGCCAAATACGTTGTCTAATATGTTGCTTGGAATTTGTGTGCCATTTAACAGAGGAGTGATCAATTTACCATCCTAACTGAAAGACCGCTGTAGGTTTTCCTCTTAATTTTCTTTCAGTATTTTGACTCGTGTGCCATGccttttaaaaatatttatatatatcccTAAAAAAAATGTACCCTCCTGTCTCCCTTCTGAAAGGCTGGAAGCAGTGAGTTCTACTAGAGTACTGTTGTGTATTTTTCTGTGCATTCTCTGTCATCCTTTTATATAGTTAACCCACTCTATGGGTGTAGGTGGGAGGAatgggggggacagagggagatgaTGTTAGTGGCACTATCGATTGCGTGACTGGAGTGTTCATTTTATTCGCTCGCCTGATTATTCCCTCGCTTCCTTCCCCCTCTTTTTCTAGATCCCTTAGTCATTTGATATGATGACTGAACCAAAATGTCAgtgagaagaaaataaaaaagagcTTGATGCTTGTTaggaaaggggggggggttaGAAGGGCTCAAAAGTATCATGGTACGTCTTGTCGGTGTGTTAACTAATGTATGAAGATGATTGATGATGATATATTTGTTGGTGCAGAATAATGGACTGTGGAAAAGGTTGACACCCACCCGAGCAAAAAAAAACAACCCGTCAGATCCCATTTGGTACAACCAATGTCTTATATGGTACTGTTGCGGTGCACAGAACctactgttactgtatgttatggaAAATGAACCGTTACTATACCTACCCAAGGCTGAAACCATAGAACTAGAATCCTCATCATTCTAATTCTGTGGTTGGAACACGTTTTAAAGGCTGTACTAtgattttatttctttttttggtTACGCTGCAGCGCTTTTCAGCTATTAGATTTGAACAATACAAAAGCTTTATTTGGCAAGACTTTCTGTGATTTAAGAAGTCTTACTTaatcaattaaataaaaaataggcTTGATTATCGATACTCACATCAGCCTGGTTCAGTTCTGTACTATTTGGTGGATGATGATTCTACTTTGTTCTGTTGATATATTATAGGCCAATATGGTCGGGTCCCACACTTCTTACTATCGATGTATTGGACATGCATTCTCAGTAGTGTGCTAGTGTGGATGTTGGAACAGAGCCGTAGAGTTTTGAGTAAACAATAACAACAAACCCTTTTTAGGAAATAATGGGGGAAATTCTAACTACATAATATATTACAGAGGAACTACACGGTACTGCATAAATAAATGTGCaacagtatttttatttttgtttatctACTTCATAGAAAGGGCAGAAGTTAAATCTCCATAGTTTTTTGGGTGTTGTGTTGATACTTTTGATTGAACACTTAAAGACGGggtttaaaattatttttaagcTAAACGGAGACAGTGGGATAAACTTGTTTTCAAGAGTATGACGATGTAGACACTTAgcagttttgtaaaaaaaaaaaaaaaacagaaaaataaaaaataacctcTGCCTGATGTTTTTGTAACTTACTATTTTATTTGCTGCTGTGTAGTATTACAAAATAACCAGTTTGAATGCGGTTGATCTGATGGCAACCATGACGGTGTCATTTTCATTGCTACCCGTGTTTTCTTTCAGAACTTAATGGCATTGTCATTTAGCTTTATGGAACAGACAGTTCTTCATACGGTGGAGGTGTTAATCCTCATATGTGCATTATATTTCTCTGCAACGTATGTCCTTAAGGGGGGAAAAAAGGTGttaaaacaacaaaaaagaagAGAAATTATTTAAATATGatagtatttttttcatgttAATTGCGcctctttcttttcttttttttctctctcacttcaGGGGAGATGGGGTCCTAATGGAGGAATTTGgagcatagtgtttatatttaTCCAACTTTTTTGCTTTCAATAGAGCTATTGCAATAAAAGTGTTAATGTACATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987001 lncRNA upstream 19525 38112886 ~ 38113534 (+) True G1735004
TU1986983 lncRNA upstream 38858 38093844 ~ 38094201 (+) True G1734990
TU1986982 lncRNA upstream 40834 38091986 ~ 38092225 (+) True G1734989
TU1986981 lncRNA upstream 42091 38090334 ~ 38090968 (+) True G1734988
TU1986942 lncRNA upstream 45013 38087528 ~ 38088046 (+) True G1734959
TU1986986 lncRNA downstream 35338 38202302 ~ 38203063 (+) False G1734991
TU1986987 lncRNA downstream 35443 38202407 ~ 38203063 (+) False G1734991
TU1986988 lncRNA downstream 35508 38202472 ~ 38203063 (+) True G1734991
TU1987054 lncRNA downstream 59738 38226702 ~ 38227910 (+) False G1735056
TU1987055 lncRNA downstream 59964 38226928 ~ 38227910 (+) True G1735056
XM_021577605.2 mRNA upstream 49087 38076983 ~ 38083972 (+) False LOC110500301
XM_036957753.1 mRNA upstream 82277 37958017 ~ 38050782 (+) False arhgap36
XM_036957755.1 mRNA upstream 82277 37958017 ~ 38050782 (+) False arhgap36
XM_036957754.1 mRNA upstream 82277 37993101 ~ 38050782 (+) True arhgap36
XM_036957751.1 mRNA upstream 179839 37893983 ~ 37953220 (+) False nhsl2
XM_036957757.1 mRNA downstream 128466 38295430 ~ 38482345 (+) False col4a6
XM_036957759.1 mRNA downstream 128466 38295430 ~ 38482345 (+) False col4a6
XM_036957760.1 mRNA downstream 128466 38295430 ~ 38482345 (+) False col4a6
XM_036957761.1 mRNA downstream 128466 38295430 ~ 38482345 (+) False col4a6
XM_036957763.1 mRNA downstream 128466 38295430 ~ 38482345 (+) False col4a6
TU1986976 other upstream 50785 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 86553 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 87993 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 369801 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 564106 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 701003 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 1012323 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 1066700 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1708792 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1895742 40062706 ~ 40063325 (+) True G1737353

Expression Profile