RNA id: XM_036957761.1


Basic Information

Item Value
RNA id XM_036957761.1
length 8309
RNA type mRNA
GC content 0.54
exon number 45
gene id col4a6
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38295430 ~ 38482345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAAGTGGGTAAAGGTAGGCTATGGAATATGAGTGACATGGCTAagccccacctctcttctctgctctcatGCACTGCGAAGCAGTTGCGGTGCGTGAAACAAGTCCGGCGGGGGACGAACGTTTTCACAACTGAACTTTGTGCCTCTCTCTTCTCGTATTTCCCGAAACAGAGACGCTTTTTGGATTCTTCAATGAGCTCGTCTAGGCACTTGTAGCGGCGGCTAGGAGGGAAGACGGGACTGGGGGAGCACTACAGGAAAACTACCTGAGTTTTCTCTTCCAGCCGTGATTCAAAATGAAATTCTGGATTTGTGTACTCGCTGTCAGCTGGGCAGTAGAAGCGACACTCGGGgggacGACAGGAGAACCGTGTAATGGGTTGGACTGTAGTGGGGGATGCAATTGTAATCCAGAGAAAGGCAGCAGGGGGCGTCCAGGGGCCTTGGGGCCAGTAGGACCCAGTGGACCAGAGGGCTTCCCAGGTGACCAAGGGCCTTCAGGGCCCAAAGGAGAAAAGGGTCACGTCGGACTCGGGGGCCCCTCTGGGCTGAAAGGAGAAAAGGGGCCTATGGGCGTACCGGGGTTCCCAGGAACCGACGGAGTCCCAGGTCACCCAGGTGCGGACGGTGGCAGGGGTCTACCGGGAGCAGACGGGTGCAACGGTACCCAGGGAGAACCAGGTCCCAGAACTCTAAACAGTGGAATACCTGGAGCTCCAGGACTCTCTGGTCCCACTGGTCCTAAAGGACAGAAGGGAGAGCCTGTATACGTTGGACTCAGtgggGGAGTTCCTGGACCGGATGGTGTACCTGGTCCTAGAGGTCCAGACGGAGGTCCCGGTGACTTCGGCCCTCGAGGTCCTGATGGATTCctgGGTGCTCCAGGCCCCCCCGGTCCCCCTGGCCCTGTAGGGAGCCCCAGTCTAGGGTTTCAGGGGGAGCCAGGAGACAAGGGCGATGTGGGCCCGCAGGGAGACCCAGGCAGGCCCTTGGTCAATGGAGTGGTGGAGTTTGTGGGCTTTCCTAAAGGAGACAAAGGACCTAAGgggGAAGGGGGTTACAAAGGAGTGCGTGGACCAACTGGTAGACCCGGCCCACCTGGTCCTTTCGGCTTTCCTGGCGAGGTGGGAGAGAGTGGAATTTTGGGGTATCCAGGGGGACGGGGTCCTCCTGGTTTTAACGGGCCTCCCGGATCTCCAGGAAGacagGGATTCACAGGAAGTCCAGGGTTCCCCGGCCAACCAGGCTACAGAGGACCTAAGGGTGACCAGGGAGAACAGGGGCCTCCCGGACCCCCGATCTACACTGATGCACAAGGGATGTCTgttcaagGAGCACCAGGTGACAACGGCATCGACGGCCTCCCTGGCCAACCAGGGGACGCGGGAGCTCCAGGGTTTCCAGGACAACCAGGACGACCAGGCGACTCCTTCAGCGATGGTCGCGGAAGCAGCCCAGGGTTCCCTGGTACACCGGGGCctaagggagagaggggtaacCCAGGCAGACAGAGCTATGGTCCTGAGGGCCAACCAGGAGGACAAGGCTTACCAGGAACCCCTGGACCACCCGGACCACCAGGCAGATCTGATGAAGACTCGTCCAGCGGCGCCCGTCTGGTCGTCACTATGGGGCCCAAGGGCCAAACACTGGAAGTTAGCATACCAGAAGtaaCCAACATCCAAACCGACTTGTTCGACAATCTACCAGGAACGCCAGGACGACCAGGAGCCCAGGGaccacctggagccagtggatatAAGGGACCCAAAGGGGAGCTGGGTGACTGTAACTGCCTGGGAGAAGGCACCTCGGGTGGGGTGGGGCCACCGGGTGCTCCTGGGTCTGATGGAAGACCTGGGGGGTTCGGACGTAAAGGCGAGAGCGGAGACCCTGGCATACCCGGTTTCGGAGGACAACCAGGAACACCTGGTCGTGCGGGTGAGAGGGGTTTCTTTGGGCGTAAAGGAGAGAAGGGGGCCTCCTTCTACCCGTCGTTCAGCCGGGGGATCAAGGGTGAACTGGGGGCCCTGGGTCCTCAGGGCCCCCCTGGAGACATGGGCCGACCCGGGAGAGATGGACTGCCTGGGTTCCCTGGACAGCCTGGGCCTCCTGCTGATGTCGATGGCTACGGAACCGTCGGAGAGAGAGGTTTCCCAGGGTTCTCGGGGGCCAAAGGTCGCGCGGGTGAACCAGGAGAGAATGGGATTGGCTACCAGGGTACCATCGGTACCCGCGGGTTGCCAGGCGACCCGGGCTTCACCGGGTTACCAGGGCAACCTGGTTTACCTGGCCCGCCAGGGTTGACGGTCCCTTGTCGTCTACCTGGCGAGGACGGAGAACCCGGCTACCCAGGAATACCTGGAAGAACAGgtcccaAGGGCGAGCCAGGTTTCCCAGGGGGTCCCGGTCGGCCCGGCTTTgatggagggaagggagagaggggagacccTGGCTTCGGAGGTCAGCCTGGACCACAAGGTTTCCCTGGCCCCAGAGGAGATGCGGGCGTCCCAGGTATCCCAGGCGAGGGCCGTCCAGGGGCCCCAGGGAAAAACGGGTTCCTGGGGAGGCCGGGGGAAAAGGGGCAGCCGGGGGAGGTTCTGGGGGCCTCAACAGGTCTCCCTGGATCACCTGGGTTTCCCGGAGGACCAGGAGACAAGGGAGAGCGAGGAGCATCGGGACTACCTGGAGGACCAGGTTTTGACGGGCGGTCCGGTGTTTCCGGCGCTAAGGGTGAGCGTGGTACAGAAGGCTACCCCGGAACTCCAGGTCTTCCTGGACTTCCCGGAGAGGGCAGACCGGGTGGATTTCCCGGTCCTGCCGGACAAGCCGGAAGCAGAGGATTAACCGGACCTCCAGGCTGTCAAGGCTACCCCGGTGTGAAGGGAGCCAGAGGTGATGCAGGCTTTCCAGGCCCAGCTGGGATGAAGGGACAACCAGGAGAACCAGGAGGCGATGGCTCTCCAGGACTCAGGGGTCTTCCAGGACCACCGGGCCCCGGGGGAAGAGACGGCATCCCTGGGGGACCAGGAAGAAAGGGCGAGAGCGGTTACCCCGGACTGGTGGGTTTCCCCGGAATGCCAGGTAACCCTGGAAGACCTGGAGGTCCCGGAGGGAAAGGAGCTCCCGGATTCTCAGGAAGAGACGGTCTGCCCGGAGATTTCGGAGGGCCGGGACCCAAAGgtgacAGAGGTAACGCTGGTCCACCCGGCGCACCCTCTCTGCCCGTCAGAGTTGAGTACATTGAGAAGGGACAGATGGGCGACAATGGTGCCAACGGTCTACCCGGTTTCCCTGGACCTAGAGGTGACAAGGGTTTCCCAGGGCTGCCTGGTCGACAGGGTTTGCCCGGGCTGCCTGGTTATGCTGACAGGGCTAAAGGAGAACAAGGACTTCCTGGTATCCCCGGACGCCCAGCCGGGCCAGGCTACCCAGGGCCTAAAGGATCTCCCGGCATCATCGGCTTCCCTGGCATGCCTGGACCTAGGGGTGACGATGGCGAACCTGGTTTCCCTGGAAACCCCGGAGTCCTTGGTCAGCCAGGTGCCAAAGGTGAGAGAGGTGACTCGTCCGGCTACCCCGGAGGTCCCGGAGCTAAAGGTGAGGCCGGAACCCCTGGTTACTCAGGCGACCCAGGTGCTAAAGGCGCCCCCGGGGACAACGGTTTCGCAGGCGGCCCTGGGTTCAACGGACAGAAGGGAGCACCGGGAGATCGAGGAATACCCGGACAAATGGGTACCCCTGGTTTCACCGGCGCTAAGGGTCTGAATGGATACCCAGGAGGAAGAGGTCTAGATGGGACGCCTGGCCGCTCCGGCTTCCCTGGAACACCTGGAGAGAAAGGTCTGCCGGGATCTCCTGGTCTTGATGGGCTCAACGGACTGGCCGGACCCAAGGGTCTACCAGGAACCCCAGGTTATAGTGAGGGGGGTCGTCCCGGCACTCCTGGAGCAGCCGgtctgaagggagagaggggctcCTCCATCCCAGGTGGACCTGGGTACAACGGAGAGAAGGGAGCTAGAGGAGAGTCAGGGGGTCCTGGTGTGACGGGCTTCCCAGGACTGCCTGGTCTTCGTGGGGAGACGATCATTTCTAATATCCCTGGACCACTGGGAGACCCTGGCCTGCCAGGAATTGATGGAGAAGAAGGTTACCGTGGTCCTCCAGGCCCCCCAGGCCCACCGGGGCCCGGTACAGCCCAAGGGGACAGAGGCGACTCTGGGCTCTCTGGCATCCCTGGtacccctggtaaccgtggagacCCTGGGGGTCCAGGTGGCCCAGGACGGGATGGAAACCCTGGATTCAAAGGAGAGAGAGGTGACTCTGGGTACAGTGGAGCATCAGGACAAATGGGCTTCCCTGGAGATCCAGGATACTACGGTGGGAAAGGACCCAAaggaaggagaggTGATACTGGTCGTAAGGGACCCCAAGGTATAACTTTCCCCAGGCCGGACATTCCGACACCCTATGGAGACATGGGAGACCCCGGGACCAACGGAACTCCAGGGTCCGTGGGAGAAGCAGGCAATCCCGGCATGCCAGGCAGGGGGGgTCCTAAAGGCAGGCCCGGCGCGGTAGGGAAGCAGGGGAGGAACGGAGGGTCAGGCCTGGACGGACCTCTGGGAGACTCTGGTCCTCCTGGTTTCCCTGGACCTACCGGgtcacaagGTCTGCCCGGTAAGCCTGGACTGCAGGGTCCCACAGGTAGTGTGGCGCGCAGCAGGAGTATTGGCTACACTCTGGTGAAGCACAGTCAGAACAACCAGGTGCCCATGTGTCCTCAGGGCATGGCTCAGCTCTGGGAAGGATACAGTCTGCTGTATGTTGAGGGGCAGGAGAAGGCCCATAACCAGGACCTCGGTATGGCAGGCTCCTGCCTTCCTCGTTTCAGCACTGTCCCGTTCCTGTACTGCACGCCCAACGAGATCTGCTACTACGCCAGCCGCAACGACAAGTCCTATTGGCTGTCCACCACGGCACCCATCCCCATGATGCCGGTGGGAGAGGAGGCTATCAGCCAGTACATCAGCAGGTGCTCCGTGTGCGAGGCCTACTCCCAGCCTGTAGCTGTCCACTCACAGGACCTCACCATCCCCACCTGCCCTGCCGGCTGGAGGTCCCTCTGGATCGGGTACTCCTTTCTCATGCACACTGCTGCCGGGGCTGAGGGCGGCGGCCAGTCCCTGTCCTCTCCAGGGTCCTGTCTGGAAGACTTCCGCGCCACACCCTTCATCGAGTGTAATGGGGCCAAGGGCACCTGCCACTACTTTGCCAACAAGTACAGCTTCTGGCTGACCACGGTTGAGCCTAACCGGGAGTTCGACCCCCCTCCGATGGACACACTGAAGGGAGGCAACCAACGCAGCCGAGTCAGTCGCTGTCAAGTCTGCAGCAAGATCTTGTAGCTGGGATAAGAGAtgaagatggagagatgggaaatgaaaaagagagagactgaaacaaCAAAGGAGAGGGTGATGATTACTTATcagaaaggaaaagagagaggtggaggtggagtaaTTGAaatggtaaaaaaacaaaaaaactttgACTGACTGAATTTGAGCACCTCTCCTGCTTCATCTAGGGGTCTCACTAGGAGGGTGAGGGGCTCCCGAATTAGCCGACGAGGGCCCTTCTGTGGGTTTATGATGCCCTTGTATTGATGTAAGACAGAAAGGGATGAAGAGATGAGCGGTCTTGTTCTAAACTAGATTATTACCGACAGTGGTGctatactgtgtgttttatgtgtctTCATTTTGTTCTTTTCACGTTACTATGGTTATGTGTCTGAAAACATTCACGGCTACCTCGGAGAGTGCAACCCCAAACCACTCCTTTGGCCTGCACTAAACCGCTTTCACTTCctgggctacatcccaaatggcccaTATAGTGACctacccataggactctggtccaaagtagtgcattacatagggaatatgatgcTATTTGGGATGAATACGTTCTCTACCGTTACAACTACATGCTGTCATGAACCTAAGAGACCTGCTACACATACCTGTTAACTGCTATAGCTAGCCAGCCGCTTTTtatactcaaacacacacacacacgtatgatAGCGATTATGTCTGCTTCAGTTAAGAGAAACAGTAAGTGTATTGCGATATATGCTTGTGGTCCTATTAGAAACCAATATGTTCTTTTTTTGTTGCTACCCTACCCTGGGGCTCAACTTGACAACAGTTTTGAAAAAGACAAATCCATCACTTTTCAAATATTAGAATGAGTGGCATAGACAGATCGAGTGAGGTAACGTCATCCCATGCCGAATCACTTGAAGAAATCGTCATACTTCTATTTATAGAAGATCCCATTTATGTGTATGTGAATGTATTGCAGTAATGCGAGTGCCTATAATTGGTATAAATCACAGGAggttgctgaggggagaacggctcacaACAATGGCATGAACGGAGCGAATGgtatggcatcaaacacatggaaaccaatgTGTCGCATGCATTTGATATCATTCCACTTATTCagctccagccattattatgagccagtcctccccaatgaaggtgccaccaacctcctgtggtatgaATGGAGTCAGTCTTTTCAGTTTAGCTACAGCGATGGAGGTTGAAGGTTCTAACCACcaacatcaccccccccccccccccccccccccccccccaatttactGCTGGAACACAAGCCATCAACACTGAACACCCATGATTATTGTGACCATGTCATCTCCTTTTAAGGACCACTCCATAATTTGAGTTTCCACCTACAGTGAGACCCTAATAGTGAATTGTGTCATTTAACTGTCACTGTGTTGGACAGATAACATAGAATTAAAGTAACTCAATGGCAGTTCCATGTTCCCAAGACCCAACCCTTTGTTTACAAATGCAGTTGTTAGGGGGGTTTCACACTTTGGGTGGAAACAGATATTGAATATTGCTACTTTAAACTCACCTCTTTCACTGACTGGAATGGGTGACCAAGCCGATCGATCGTACATTGCACCAAATCATGTTGGCTTTGTAATTATTTAGAACCATCATTTTCTCCATGGTTTCACTCAGGTTATCGAGGTGAGGAGAGTAACTATCTTTGCTCCATTTTTTGTGACCAAATTTGGGTTTTATAAAACCCTCCACCACCCATACTTGAGCCAAAACATACAAGTACGCAGTAACTGCTTGGAAGGAATCACAAACTAacaacaaacacaccacacacacattttccGTTACAATATTTGCTGTTGGACAGAAGCTCACCATACATTTTATCAGAGCAAACGATGGCCTACTGTGTTGCTGTAGTCCCTATCTGCTCTCCTCAGTTGCTGTCATGTCAATGGATGCGTTCCAGTGCGACTACATTGCAGACGCCTGCGAGATCTCAAAACACTTGGATAGGTGAGTAatatatcagctaaccacatcatatgatcTAGCAATCTGACGCCAATGCAACGCCTGCAATGTAGGTGGCCTGGAACGCAGCCACTGATGTTAAAAGTGCTGGGTGACTTAAGTTGTAACCACTATGTCTAACACATAGGCCCATCTCTCATTGGTAGCCCTGAGTACATCTTTTTCAAttagatttttttctcatttgttGTTCTTTTGTCTGTAATCTAGATTGTAATTCTTATACTTCACTGTAATTATTCCCTTGTTCAAAGGTTATTTACAAATACATTATGGGGAAGATGATCTGTACATTCGATGATAGGAacgaacaaaaaaaacatttaggaTATGTTTTATATGGAAATATATATTTCTATGGTTATATTTGAATGACACAAAaagataaaaacacatttttgttgtcACTGTTTTGACACTGACCTCTGTTGAATATATTCCACTGTCTTAAAAGGAATTTTGAGAACctgaaaaataaatatttttcataCAAATCCACATTTTACACGTATAACAGAGATGTATAACTGCAATGATTATGCTACATTTTCCTCAACAGATTTAGTCAAAAGGTGCAGTGTTGTGTTCACAATGAAATAAAAGTATTACAACTAACACAGATTGAGATTGAATGAAGAACAATGAGTAGGATTGTTTGAGAGAAATTAAACAAAATGATATACCACCTATACAGATCTAGACTACAGTATGTTGTAAAAGGGTCCAAATTAAATATATGTTGTTTGATGTCGTGGAGTTACCACATTTGAAGAGTGCAACATACCTAACCTAGTAGGTACTTAACACAGAACGTGCTGTGTGCTTAACAAGACAACATTAAAGTATAACACTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987054 lncRNA upstream 67520 38226702 ~ 38227910 (+) False G1735056
TU1987055 lncRNA upstream 67520 38226928 ~ 38227910 (+) True G1735056
TU1986986 lncRNA upstream 92367 38202302 ~ 38203063 (+) False G1734991
TU1987748 lncRNA downstream 16464 38498809 ~ 38499101 (+) True G1735700
TU1987749 lncRNA downstream 17029 38499374 ~ 38499584 (+) True G1735701
TU1987771 lncRNA downstream 32887 38515232 ~ 38516261 (+) True G1735723
TU1987804 lncRNA downstream 63851 38546196 ~ 38546703 (+) True G1735756
TU1987820 lncRNA downstream 92613 38574958 ~ 38576555 (+) True G1735770
XM_021577652.2 mRNA upstream 128466 38133059 ~ 38166964 (+) False LOC110500338
XM_021577605.2 mRNA upstream 211458 38076983 ~ 38083972 (+) False LOC110500301
XM_036957753.1 mRNA upstream 244648 37958017 ~ 38050782 (+) False arhgap36
XM_021577655.2 mRNA downstream 1058 38483403 ~ 38496665 (+) True ankrd46b
XR_005038591.1 mRNA downstream 23759 38506104 ~ 38514584 (+) False LOC118942926
XR_005038592.1 mRNA downstream 23759 38506104 ~ 38514584 (+) False LOC118942926
XM_036957766.1 mRNA downstream 24120 38506465 ~ 38514584 (+) True LOC118942926
XM_036957767.1 mRNA downstream 60034 38542379 ~ 38654406 (+) True LOC110515117
TU1986976 other upstream 213156 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 248924 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 250364 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 532172 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 726477 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 385622 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 696942 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 751319 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1393411 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1580361 40062706 ~ 40063325 (+) True G1737353

Expression Profile