RNA id: TCONS_00052799


Basic Information

Item Value
RNA id TCONS_00052799
length 1983
lncRNA type antisense_over
GC content 0.36
exon number 5
gene id XLOC_025761
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53526965 ~ 53652401 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGAACTTTCGTGTCACGTCTATGAAGGCCACACTCCACGCGAAAGGAAGTTGTTCATGAACATCACGAATTCAGTTTTCACCATGTTGCCCAGCAGAGAAAAAGGAAAAAGCCTTAAAGCTTCAGATCACCTCAACCACTGCTGTTGCACAAGAAGGTGGCTCCAGGAACCCGATCTCTGTGAGACGCTCGTAAGAGACTGTCACTCACCGTCTCCGCACTGCAGCTCTCAAAACCTGCCTCAGTCAAAATCACACTTTCACAGAAGTCATGAAGGCCCTCATCAGAGCAATGCGGATGCTAGACTTTGACGAAATGAACTGGAGATTAACATGTCAAAGAAGGCGGAGCTTCATAGCCACACCTACCTATGACATAATCAGCATGGATCAACGGTAGTTCGAAGGTGTTTACCAGCTGGAGTGAACTTTTCCGACGTCAGACTTCGACGAAATGAACCAGAGATTAACACGTCAAAGAAGGCGGAGCTTCAAAGCCACACCTACCAATGACATAATCAGCATGGATCAATGGTAGTTTGAAGATGTTTACCAGCTGGAGTGAACTTTTCCGGTAAGAGCGCTCCCGAAGTCAACTTCGTTTTGAGTTGTAAATGACGTCACACGTTTcgtttttgcttttcatttatccAATGTATACCAGGAGCCTGTATGTTACCTTAAATGTGCTGTTTAAACATTGATGACAGTACATAGGTGTAGATATTTCACATGCTAGCACAGTGATGTTACACCTCGTCACCAACATATTAGCGAAGTGAGTTGATATGCGCCATGTTGACGGTTTGCATCATTCAATCTTGCACTGATTTGATTGAGAACCTGTTGGTATTGTTGATGTGAGAAGTACACTCCCAGACTCTGGAAAACTCACTCAACCTGATCTGTGTTTGTCAAGCCTCCAGATTGTGGAAAACGATTACGAAAACATACTTGTTTATAGGCCACCATGTCTACCCACAGACATAAAGCAAACAAAATGATTGTATATGTCTGTAACAAATACGCTTCTCACACTCTCTTCACAGCTTCTGGCACTTTCCATGAATACAGTGCACTCCGGTGTCTCGTTTCAGTTTGTTTTTAGACCGTTAAGGGGCAtacctttttttgttgttgtgagaACTATTTAATAACTTTGATATATTATCTAGCGCTGCTTTAAATGCTGGTTTTGGCCCATGTCCACCGATTGCAGTGATAATTTTAACATTGAAAATtggttaatatttaaaaaaatctgattaaatatatgtattttttaaataatcaaaatacattttgaaagtaatttgatttgattgatttatttattttgaaaagacaaatcatacacaaaacaattctttaaacaaattATCTTTCAACATGGTCAAAACGGAGCGGGATGAAGCAAAAGCGTATTATTTTCCCCACCCCATTACTACACTCTTCATTCGCCTAttacttgtcttttttttttttgttcttgtctcttctttttacatgagacatataaGCTTTACATGAGACTCATTTTATCCTTTTAGCATCTTTAACATATTATAtatttgattccatttgtacatttacatttagaacATAGACCCAAACAATACATATTATTGCAAACAGccattaattatgtttttatcatacctttctcattttggtcttttaaatatcctctattaatcattttattaatttaataatatatatttttgcaactttttaaattgattaatatcctgacattgAGAATCTGACTTttccataatttcacaccacatgcagacatacacacattttttaaaaagttgtccttgttttcaacctcttAAGAtttcttctctcagattatatcctccttgtttttttttcaaaacacttttgtaTGTGTTTCGGAAgtaatttattcctagctttaaacatgaattgtgctgttttaaatttaaccaaattaTTGAACTTGAGtgtctt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052380 lncRNA upstream 717255 52806272 ~ 52809710 (+) False XLOC_025750
TCONS_00052379 lncRNA upstream 1134760 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00052798 lncRNA upstream 1137926 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00050604 lncRNA upstream 1147493 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052797 lncRNA upstream 1262819 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052383 lncRNA downstream 458988 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00050637 lncRNA downstream 570924 54223325 ~ 54226528 (+) True XLOC_025763
TCONS_00052800 lncRNA downstream 618302 54270703 ~ 54271345 (+) True XLOC_025766
TCONS_00052384 lncRNA downstream 631366 54283767 ~ 54284185 (+) True XLOC_025767
TCONS_00052801 lncRNA downstream 637277 54289678 ~ 54303624 (+) True XLOC_025768
TCONS_00050631 mRNA upstream 4757 53511936 ~ 53522208 (+) True XLOC_025760
TCONS_00050630 mRNA upstream 77528 53352018 ~ 53449437 (+) True XLOC_025759
TCONS_00050629 mRNA upstream 176418 53317040 ~ 53350547 (+) True XLOC_025758
TCONS_00050628 mRNA upstream 252680 53240562 ~ 53274285 (+) True XLOC_025757
TCONS_00050627 mRNA upstream 295621 53228684 ~ 53231344 (+) True XLOC_025756
TCONS_00050632 mRNA downstream 120855 53773256 ~ 53919463 (+) True XLOC_025762
TCONS_00050633 mRNA downstream 360307 54012708 ~ 54238460 (+) False XLOC_025763
TCONS_00050634 mRNA downstream 394941 54047342 ~ 54238460 (+) False XLOC_025763
TCONS_00050636 mRNA downstream 515606 54168007 ~ 54237556 (+) False XLOC_025763
TCONS_00050638 mRNA downstream 901530 54553931 ~ 54567961 (+) True XLOC_025770
TCONS_00050620 other upstream 697959 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 906790 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 3451775 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 4394488 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 6066362 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050635 other downstream 415122 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 1646642 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 1831112 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 3983973 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 4173538 57825939 ~ 57829919 (+) True XLOC_025812

Expression Profile

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