RNA id: XM_036957767.1


Basic Information

Item Value
RNA id XM_036957767.1
length 5855
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110515117
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38542379 ~ 38654406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCTCTGGCGAGTAAGTGCCTGACCCGACACTAGATTGATACTAGACGTTGTACCATTACGACGACTACTGCAATAGAAAAGATGAACTTGTCTTCTACCTGAAGGGAATATACAATTAGATATATTCTGGCTGTAGTATCCCTTTAAATTCATAACGGTTGTCTTCAGTACTCGACAGACAAAGACGACTGTGGAAGAGACTTCGTTATTTTTCCTCAAAGGTTGTTTTTTAAACCTTTCTGGTTTTTTTGAACGACCTTGttggttttatttttatttttttgtagtgAGGGGACTAATAGACCGGACAGCAAAGTGGATTTAACGGGTGCGTCGCTGCCTTCCACTTGATCTCCAAGATGCTATTGGTGTCTCCGCGGTTAGTCGACACACCTCGCATGGAGCCCATACTGTCTGGATCACTGAAGAGGAGGCTGACTGCGACTGAGGGGGCCCACCAGGGGGGCTTACGGCAGGGCCAAGGGCCCGGTAATGGCCCTGGTCTGGGTCTGAACGGTACCTCCGACGGTTCTTCCATGACCCAGGGGCCCGGGGGGCCCACCAAGCGACTCTGCCTGGAGGATGTGACCCTCGCCATGGGTACCAGCTTCCAGCAGAACTCTTACTCTGGAGGACCCAGTCCTGGAGGTCATGGAGGTCCTGGAAGTCAGGGGTCACTTGAAGGTAACAGGCTGGGGAATGGGAACAACGGGCTAGGGTCACCCTACTCTATGCCCCCTAAGGCGAGTCCTGGGTCTGGGGGGCCTGGAAGTGTTGGTGGAGGAGGACAATTTCACCCCAATGGAAGCTCCTCGTCGGCCCCATCGGTTGAGCAGGAGCTCCAGGATATTCTGGatgagttgaccaagaacccagaTCCTTCTCTGCAGGAGTTGGATCTGGATAAGATACTGGGGAATAAAGAGGAGCAGAATCAAGGATCAGGGCCGGGGTACATCCACCCACATTCGCCCAAACGCTCCCCCCAGAGAACCACATCTCACCTGGAGAGCCACCTCACCCACTCCCCAGGCTTTCCACAGGCAGGGTCTCCCCAAGTAGGCCCGAGTCTGGCCGGAGCCCCCTACTCCATCCCCCACCCCTCCAAACCCGTTCCCTCGCCTCTCTCGGCTTCACCACACCATTCCTCTTCATCCCAGAACCAAGCACGTTCTCCGATGTTATCCGCCGCCCTCTCCTCTCGACCCGGGTCTACTTGGCACGAGGTATCGCGAGCTCAACAGCTCCAGCAAATGGCGTCCAACTCCAACAAACACCTTTCCTCCAACACCCCTAtcccccagaaccagacccagaatcAACCCCAGACCCAGGCCTCTATGCCTCCTCTATCCCAGCAAGGCTCACCCTGGGGTGGGCAGAAACTCCCCAACTCCTCCCCGCTCCACCAACAACCATTCAGCCCGGCTGGAAGCATTCAAAGCCCCCAGGGTTCAATGTCAATCTCCATCCTGGCTCCAGCTCCGTCTGCAGGGCCTTCACCACCCTACCGCCCAGATAAGCTAGGCAGTCCGGCTCTCGCCCAACCCCCCTTTAGCCCACAGAGTACCCTTCTACCTTTAGGAAACACCAGCACATCCAGCACTTCATCCAACATCCAGGGGTCACAAGCCAACTACATGCCCAGTGGAGGTGCACCAACATCAGGCGTCACAAGACCATCTCCCCCCTACCGAACTGACAAGCCTCACCAAAGCCCGGCACTCCAGTCCCAGCATCAACCTCAACCCCAGAACcaacccctacccctaccccaaACCCAACAACCACATCCATACAGCACCCAGAACGGGTCAGGACCCAACAACAACATCTCGAGTCAGCTCTACAAAGCCATGACGGCTGGTCAACCCAGCAGCCTCAAGCTACTCATGCAAcagcaacaacatcaacaacaacaacagcaacattcAAACACGCAACAGCTACAGACGAACGCCCAACTGGGCCAACACCCATCCATGTCCAAACCATGTGGTGGTGGAGTCCCGCACCAGGAACCCTCATATTCCTTCACCAACACCAAGCCCCTCCGCCATTTTGACCTGGACCCCCAGCAGAAgatgggaggagggggtggaCCCCCAATGGGCCCTGGACAGGGTGGACCCCCCAACCCCATGGCTGGTTACCGTGGAATGCAGCATGGTGGTGCAGCCGGAACACCAGCGTCAGTAGCAGCGAACCATGCCCATCTATTGCAACAGAGGATGCAGCAGAGAGCAGCAATGCAGCAGGCCGCAGCAGGAATCATGGGGCCACAACACTGTAGAGAGgagcaGACCCCAGGCATGGTCTCTCGTCTCCAGGACCCCTCAGTCCCCCGTCCAACCCAGACCACCACCAACTACAACCTGCTGCTGAAGAGCCAGCTCATGAGGAAACACCTTCAACAGGAGCAGAAGAGGCAGATGGAGCAGATGAACGGACCACAGATGGCTGAGTGTCAGCAGGGGCCACCGTTTACAGgTGGTGGTCGGCCTCTCCCCCCAGATTGTGGTGGTGGCGGAGGCTACCCCATGGGCGGTCCCCAGCTATCCCACGGAGGTCAACTCCCTTCTGGGCCCGGCcgcctctcccttccccctggcCATCCAGGCCACCCCGGACCCCCAGGATCTCTCACCCAAGTGGGCCGCCCAATAGGAGGCTTCATGGGTGGGCCTCCAGGTTCCAAGCAGtccctctaccaccctccacAGGTGGGTGAGTTTGTTGGTGCCGGTGGTATGCCAATGAGACAACCACAGTTACCGCACGGCATGATGGGAATGGGCGGTCTGGCTGGTCCTCCAAGGCCAGGGATGCAGCAGCAGGTGTCCAGGACAGGGATGACAATAGGGGGGTCGGGGCCCGGGTCGGGGTTACCACCTGGTCACCCCCAGCACCCACAGCATCTACGCCAGGCTCTGCATCATGGTGGTGGAGGGGCGCCACTCCCACGAATGATGTTCACCGCCCAGCAagctcatcaacaacaacaacagactgcAATGTGGCCTCCGCAGCAACAGGGGGGGATAGTGAACGCCCTGCAGCAGTGCATGCCTTGCGGTGACTCCCACATGGACCAGTCGGCCAATCACCAGCAGCCGCGTGGGCATGTTTTTCCTGGAGGGGGCGGGGCCTCAAACGGAAGTTGCGGTCAGAACCCTAACGCCCAGTTTACCCAGCAGGCATTGCGGTCGGGGATAACCGGGGGCGGTGGGAACAATTTCGCCCCCCACCAAGGACCTCCGTCGTTACCCTCCAACCAGGTGGTCGGGGTGCCTTCCTTACCTAGCAGACTGATGCAGAAGCTGGGTGTCTCCGTGGCAGGGCAGCCCCTACCCTCCATGGTCCACCAGGGGCTCCAGGCCGGTATGCGACCCAGGGGACCCCTCTCTGCCCTGGCCGGGATGAAGCCCGGTCCTCTTGGTATGATCCACCCAGGCCACGGCATGGCCCCACCAAGCTACCCTGCCTCTGGGGCCACCATCGCAAAGCACCCGCACTCTCATCCACACCAACATCAACACCCCCATGGGCCTGGATATGGACCAGGACAGGGGAACCCCGGACACAAGCTACCCCCATATGAATACAGTCAGCAGGGGCAGAGCAATGGGGGGATGGGGGGTAGgccgggaggaggaggggaggtagacTTTATTGACACTCTGGTGGGGTCCAATGAAGACTGGCTGAACAACCTGACTATGATAGACGAGTACCTGGAGCAGAACTCATAGGAGGGGGGTCAAATGTGAGAGATTATAgttcaggggttaggggtcagtttGTTGACCTCTCAGCTGTATAGAAGTGATGTGGTTCTGGGGTGTGACAGGGAAAGGGGTTATTACAGGCTTATGAAGGTTTATAACAAGGTGTGTACCTTTCTAGAAGCTTCTACCTGAGTGGACGTTTTTGAATGAATGTGATTGGTTCCATTATGGTTCCACTCCCCCACAAGTCCGCTGTCCAATATCATCGGTTGCCATTTTGGAAAGAGGGAATGGCCCTAAACGGAACACAGGGAACATATGGATCCTCATAATGCTGGGAAACAGAAGCTGAAGCTTAACTCCAAAGAGCTAGCAGCAGAGTAGTAAACTAGAGTAGCAGGAGTAAAAGAGCGAGATGCTCCAGATTCTGGTCCTGACAAGAAAAACTCCACCGACAGTACATTTTATCTTCTGCTGTTCGACctatccagtaaatgtggaggaggagtgaaGATGGAGTGTCGCCTCGTTAACGTCCTAAAGCGGAAGTCGCGTCACAGGCGTATTTATCTGGTTTTAGTCTGGTCCGCTGAGGGTGGCAGAGTAGTGGAGTCCAAACATTTTCATTGGCTGTTTCTGTGTCTGTTACTCGGACAGTGGACTAAGGAAGTTATTTGAAATCCTCTCCCCTGTAGGGATTTCTCCTAACAAAGGGATAGGTGTATAAAACACACTGTGATTGGATGAAATCAATGTCCTCCAGCATGCAATTGGTCCAATGTTTTTCAGTGCAATGTTGTGGTCTGTACTAAATTGAATTTTGTTTCAAAGTATTTTGGTGTGATTTGGAAGCACAGCGAAAAATAAAGATTCCAGATTAACCAATCCAATCCAATCCTGCTCTCACATAATGTCTTTGAGCCAATCGAATATGAATATACAGGGAAAGACAGCCAATCCCTGATGAGTTTGGGGTAATATCTATCACTGATTGGCCAAAGGAACTACAGAGATGGTCTGCCATTGTTTCCATGGTAAATTGTCATCACTATTTTGATCGTGAACGGGGGAGTGTGGGGGCTTGTACATAGTAAACTATTTTGTAAAATATGTTTTTGGTAAACTGTATCATACACAAAAGAGAAGTACACATATTTATACTTCTTTTCTGCAGCGTAAGTCTACAGATTCCCTTTGTACATAAATGATCCCCAAAttataaacaaacacacataaatgCTGCAAAAAACATTGAAATTATAGCTCACAAAATAAAATCTGTTTTACACTAGAATAACCTTATTGTAATTTGTTTGAAATATGCAAGACAATACAATTAGTGTAGTTTTTTTCcagtaatactgtgtattacAATGTTATTACATATTTGTTATGTTTGTGACATAACTCGAGTCCTGGTACCCCAATTGCCAAGGCTTCTTTTGAAAGtggattttgaacattcaaaatACACACACCATTGCAAGAtactgttccacacacacacacctacacacacacacacacacacacaccctctctcactctggcAGTGCCCATACCTGTGAGGTCAAAGTTCATCATCTTGGTccttctactgtactgtaatatctTTGTTCACAGGCAATATATCCATAGACTTAAACATTGTCAACATTGCATAATCTAAAACAACAATATAACCTGTTTGATCTGTATTACCATATCACAAAGGTAAAGAACACAGCCTAACTTAAAGTGGAAGCCACTATCATAGAATCACCACACTCTATAAAGATGCATTAGTcttctccttgtctcctttccttcattcaCACAGATTTGAAAGAAACGGACAGGTGGCAAATAGGCTTCCGCCATACTGCTTTCACATATCCGATGTCTATCCTTTCAGATTAATGCTGATAAAGGGGAGACTAGGAAAGGAAGCGTCTGTAAATTATTAGGATGCACCCCCATTACAGTTTCCCCTACCTTTTGGACCAGACAGGCTGGTGGACAATGACTTAAAAAGCCATGAAAAGAGGTTAATCGACTATCTgtgattttattttttgttttttttgtcttgatattttttttgttgatttaaaataataaactgtataaatgggagagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987771 lncRNA upstream 26118 38515232 ~ 38516261 (+) True G1735723
TU1987749 lncRNA upstream 42795 38499374 ~ 38499584 (+) True G1735701
TU1987748 lncRNA upstream 43278 38498809 ~ 38499101 (+) True G1735700
TU1987602 lncRNA upstream 95863 38443620 ~ 38446516 (+) True G1735560
TU1987546 lncRNA upstream 197229 38344950 ~ 38345150 (+) True G1735507
TU1987882 lncRNA downstream 15003 38669409 ~ 38669923 (+) True G1735820
TU1988007 lncRNA downstream 288772 38943178 ~ 38955401 (+) True G1735932
TU1988000 lncRNA downstream 311635 38966041 ~ 38982550 (+) False LOC110500354
TU1988001 lncRNA downstream 311635 38966041 ~ 38982550 (+) True LOC110500354
TU1988066 lncRNA downstream 380103 39034509 ~ 39089363 (+) False G1735986
XR_005038591.1 mRNA upstream 27795 38506104 ~ 38514584 (+) False LOC118942926
XR_005038592.1 mRNA upstream 27795 38506104 ~ 38514584 (+) False LOC118942926
XM_036957766.1 mRNA upstream 27795 38506465 ~ 38514584 (+) True LOC118942926
XM_021577655.2 mRNA upstream 45714 38483403 ~ 38496665 (+) True ankrd46b
XM_036957760.1 mRNA upstream 60034 38295430 ~ 38482345 (+) False col4a6
XM_021577658.2 mRNA downstream 7678 38662084 ~ 38718323 (+) False LOC110500343
XM_021577659.2 mRNA downstream 7678 38662084 ~ 38720802 (+) False LOC110500343
XM_036957768.1 mRNA downstream 7687 38662093 ~ 38720802 (+) True LOC110500343
XM_036957770.1 mRNA downstream 72026 38726432 ~ 38739708 (+) False LOC110500344
XM_036957772.1 mRNA downstream 72026 38726432 ~ 38739708 (+) False LOC110500344
TU1986976 other upstream 460105 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 495873 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 497313 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 779121 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 973426 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 213561 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 524881 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 579258 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1221350 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1408300 40062706 ~ 40063325 (+) True G1737353

Expression Profile