RNA id: XM_036957773.1


Basic Information

Item Value
RNA id XM_036957773.1
length 3674
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110500344
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38726432 ~ 38739708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCCTCAAATTTATCCTCAATCTATGTGTTGCTGAAGCTGGTTAGTAAGGATGTGAGCATTTTGGGTGATCTTAATGGTTCGCCTGGGCAAGGTGTGTGCTGTCCTGCTCCAGGGTTGAGCTTACTGACTGCTTCCTCAAATCTGCAAAATAAACACACCGGCTCTATTTCATTAACAGAACGAGACTCGGAAGCTAGCGAACATCCGTATTCTCTCTCgtgctgtgagctagctagcggAAGAGTCAGTCCCATCCGTATAAAAACAACGTCAATTCTTAAACACGTTGCCGCCACACAGATTTTGTCGACATTCAGAAAGGAAGCATATTTGATCCGTCATCTAGCGGGAAGGAAACGGGGTTGAGTGGAGACTAAAATGGAAAAGCACTCGGTTGGAGGAGGAGATAGCCCTGCGCTGCCGGGAGTACCGAATCGAAACAACCAGCCACGAACGCTGGCCAACTCTGGATCGACACAGGCTAGCGTGGAGACATTGGACAGTCCTACAGGTTCTCATGTGGAGTGGTGTAAGCAGCTGATAGCAGCCACCATCTCCAGCCAGATATCATCCATAACCCCAGACACTGCATCCAGAGACTTCAAGGTGTCCAAGAGGCCTGTTCTCAGGGCTCTCAGAGACGGAACCAAGCAGGTGCAGATGGACGAGGTTCCACTGGTTCCGGGAGAGACCGTCAAGGCTGTGGCCAAGGATGTGATGTACATCTGTCCCTTCACTGGCTTGGTGACAGGAACCCTCACCAGCACCGACTATAAACTATACTTTGTCAGCCTGGAGAGGGATACTCCCTTCATCCTGGATGTGAACCTGGGAGCGATCAGTCGTCTCGAGACCATCAGTGTCCAGAGTCATGGAGAGAACACACAGGGCATGGAGATAGTCTGTAAGgaCATGCGTAGTCCCCGGTTTGCCTATAAGAAGGAGGACGCCAGCCAACCAGAGATAGTGGAGGTTCTAACAAAACACACCTTCCCCCTATCAAATGGCCTGCCCTTGTTTGCCTTCCTGTATAAGGAGAAGTTTCTTGTGGACGGATGGAAGGTGTACGATCCCATATCTGAGTACAAGAgacagGGTCTTCCCAACGAGAGTTGGGCCATCAGTAAGATGAACAGTAGTTATGAGGTGTGTGACACCTACCCTGCCCTGCTGGTCATCCCCACTAGCATCAAGGATGACGACCTCAAACGAGTTGTGGCCTTCAGGGCCAGGCACCGCATACCGGTATTGTCATGGATCCACCCGGAGAGCCAGGCCACTATAGTCCGTAGCAGTCAGCCTTTAGTGGGACCCTCTGACCGGCGCTGTAAGGAGGATGAAAGATACCTCCAGACCATCATGGATGCTAACGCACAGTCTCACAAACTCACCATATTTGACGCCCGACAGAGCAGCGTGGCAGACAACAACAAGgctAAGGATGGTGGTTATGAGAGTGAGAGTTTCTATCCCAACGTGGAACTCAACTTCCTGGAGATCCCCAACATCCACGTGATGAGGGAGTCACTGAGGAAACTGAAAGAAGTGGTCTACCCTAGTACAGACGAGGCCCACTGGCACTCTGCCGTCGACCAGACACACTGGCTAGAGTACATGCGGgtcCTCCTTGCGGGTGCAGTGCGTATAGCTGACAAGCTGGAGTCTGGTAAAACCTCTGTGGTGGTCCACTGTAGTGATGGGTGGGACCGGACAGCCCAGCTCACCTCTCTGGCCATGCTGATGCTGGACAGCCACTACCGCACCCTCAGGGGCTTCCAGGTGCTGCTGGAGAAGGAGTGGATCAGCTTCGGACACAAGTTTGCCgcgCGTGTGGGCCATGGGGATGAGAACCATGCCAACTCGGAGAGATCACCTCTCTTCATCCAATTTATAGACTGTGTCTGGCAGATGACCCGACAGTTCCCTGCAGCATTTGAGTTCAATGAGTTGTTCCTAATCACCATTCTGGACCACCTCTACAGCTGCCTCTTTGGTACGTTCCTCTACAACAGCGAACAGGAGAGAGTCGTCAATGAAGTCCAGACCAAGACAGTCTCTTTATGGTCCTACATCAACAGTCAACCAGAGGACTTCACCAACCCGTTCTATGTGGACTATGAGCACCACGTCCTGTACCCTCTGGCTAGTGTTCGACACCTGGAGCTGTGGACCGGGTATTACGTGCGATGGAACCCCCGTATGAGGCCACAGGTAGGGGTGGTAGTGCGCTTGaTGCCAGTGCACCAGAACCTGAAGGAGTTGTTGTTCCTGAAagctgagttacagaggaaggTTGAAGAGTTACAGAGAGAAGCATCTTCATCACACGGCTCTCTTTCCTCTTCATCAGAACACACATCATCACCCTCACACAGCGGGGGCACGCCCCTACACACCACCgtctgaatacacacacacccctaccaaCACATTTGTCTTTGTATTCCCCTATTTTTCCATAAGTGTTTTTTATCATAGAGAAAATAAGTACACACTTGAAACAAAGTTTCGTTCTTGGTTGTATTCAAATAAGATATAGGGTAATGTAATTGTTGAAAGAAATATTACAGTATTGAGAGAAATGCACCATAATATTTTGTCGAACGTTGAAAGTGTAAATATAAATAGATGTAACTAATATATTTATACCTACCAAAAGTATACTCTTTACGGATGACAACAATTTCTAATTGAGTTGAATTCATATTTCTAAACTATCAACAGCACTTCTTAACTGCCACATTCCAGTAAGCATGTATTATCAACtcaatggcagcctattccctataggtcccggtcaaaagtagtgcactatgtcgggaatagggtgccatttggagtgTAGACTGAATaagatctctatctctctgtactAACTTAACCTGATCCAGCTGTGCCATAactattcctctcttcctgtccgtCCGTTTAATGTGCCCTGACTGGAGGTTTACCTTTTTGTGTATGTTGTGTTCCTATCAACACGTTCCATTGAAAGTCTCTGTGCAcgtgtttttttttatgtcattTTTTTCCTATTCAATGTGTTTCATTTCTATGCAATGGTGATATCCATATGATCTGTATTATATCTTGTATTCTTGTTATCTTTGGTATTCCTTTGTGACTTTTCTTTCATTGTGGTGACGCCAAATCCTTATTTTAGGTTACCATTTGCACCAAGATGCTCTCCTTGCCCTCTGCCGACGTTAATCAATGGTAATGTGGTCTGAGCTCATATCCCCTTTGTGGCTTTGAAGACACACTGCAGCAATACTGACATCCTGTGATACCCATATCCTTTTCCTTGAGGAATAGATCAATATCATTTAAGTCTAACTAACCTTAATGTCTTTGATATTATGTATGGTTCCTACTGTATTATGGTGGTTGTAACTGTTTCCTGTGTCATGTGATGGTTATAACCACTGTTTCCTGTGTCAAGCTTATGTTCTCATTACTGTGCTGCAACTTCATTGAACTTTTCTGTGGTAAATGTGATTATTTTCCAATTATTGTAACCTATTGTTTTTCTCTTAGTTATTTTTTTAGGTTGACATGGTCAAATAACTCAAGAATAGATTGGTAACATATTTTCTAATTTGGCACACAAAACCTAGAGGCCATGAATAacttgataaataaataaaacatgtcacCAACTGGCCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987882 lncRNA upstream 56509 38669409 ~ 38669923 (+) True G1735820
TU1987834 lncRNA upstream 98023 38592329 ~ 38628409 (+) True G1735778
TU1988007 lncRNA downstream 203470 38943178 ~ 38955401 (+) True G1735932
TU1988000 lncRNA downstream 226333 38966041 ~ 38982550 (+) False LOC110500354
TU1988001 lncRNA downstream 226333 38966041 ~ 38982550 (+) True LOC110500354
TU1988066 lncRNA downstream 294801 39034509 ~ 39089363 (+) False G1735986
TU1988068 lncRNA downstream 294801 39034509 ~ 39089363 (+) False G1735986
XM_021577659.2 mRNA upstream 5630 38662084 ~ 38720802 (+) False LOC110500343
XM_036957768.1 mRNA upstream 5630 38662093 ~ 38720802 (+) True LOC110500343
XM_021577658.2 mRNA upstream 8109 38662084 ~ 38718323 (+) False LOC110500343
XM_036957767.1 mRNA upstream 72026 38542379 ~ 38654406 (+) True LOC110515117
XM_036957766.1 mRNA upstream 211848 38506465 ~ 38514584 (+) True LOC118942926
XM_021577670.2 mRNA downstream 117408 38857116 ~ 38864530 (+) False hmgb3a
XM_021577671.2 mRNA downstream 118777 38858485 ~ 38864530 (+) True hmgb3a
XM_036957781.1 mRNA downstream 128227 38867935 ~ 38939119 (+) False arrb2b
XM_036957780.1 mRNA downstream 181698 38921406 ~ 38939119 (+) False arrb2b
XM_036957782.1 mRNA downstream 216431 38956139 ~ 38967877 (+) False LOC110500354
TU1986976 other upstream 644158 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 679926 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 681366 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 963174 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 1157479 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 128259 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 439579 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 493956 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1136048 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1322998 40062706 ~ 40063325 (+) True G1737353

Expression Profile