RNA id: XM_021577671.2


Basic Information

Item Value
RNA id XM_021577671.2
length 2127
RNA type mRNA
GC content 0.45
exon number 5
gene id hmgb3a
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38857116 ~ 38864530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTCGCCTGTATAGCAGCTAGTACTACCCAATACAAGGCGCTATGAACTGGGACTGAAAGCAACCGAACGGAGCGGCGAATTAAAACCAGAAAAAGTCATACATTTTTGGGCAAAaTACTGACCCAATCAACCACCTGACCAATTAACCAATAAACGAGTTACACAACGCCGCTAGGCCCCGCCCAGTGACCAGGATGGCTAAAGGCACCCCTGGGAAGCCCAAAGGCAAGATGTCTGCCTACGCCTACTTCGTTCAGACCTGCCGGGAGGAGCACAAGAAGAAGAGTCCCGAGATACCTGTCAACTTTGCTGAGTTTTCCAAGAAGTGCTCCGGACGATGGAAGACTATGTCTGGCAAAGAGAAGGGGAAGTTTGAGGACATGGCGAAGCAGGATAAGGTGCGCTATGACAACGAGATGATGCACTTTGCCCCTGGCGGCAAGAAGGGAAGGAAGAAGGACCCCAATGCACCAAAGAGGCCCCCATCTGGTTTCTTCATCTTCTGCGCAGACCACCGGCCCAAGATCAAGGCCCAGCATCCCAGCCTGGGGATAGGGGACGTGGCCAAGAAACTAGGCGAGCAGTGGAACAACCTTACTGATGCTACGAAACAGCCCTACCTGATCAAGGCCAACAAACTCAAAGACAAGTATCAGAAGgacGTGGCTGACTATAAGTCCGGTAAGGGGAAGGTGGGTGCTCCGAGCATGGTGATGGCCCCTAAACCCATGACGAAGAGTAATAtggatgacgatgatgatgatgacgacgaggaagacgaggaggaggatgaggaggaggaggaggatgacgaGTAGACCGACCGCgttctgttttgtgtgttgtgttattatgatgaagatgatgacgaCGATGGTCATGATTATTAAGTGATGCAGGGTTTTTTTTTCAGTTTGAAATGCGATTTGTAGGGTTAGAGGAAGAAACACTGGTGATATCTTTATGTTGCTTAATTACGTTGCTCCGCCCCTGCCACacttccctcctctccactctttgTTGTTTTGACTTTGTCACTATGTTGATTTTGTGTAAACCGCTTATGCAAAGTTCTCTATGTAACACTGAGTCCGCTTAAGAAGTTGAGACTGTACGTTACCTCGGCAACTGTGATTGAACTCAAAGCAGATCCCTAATAATCCCCCCAACGGCTGTGTGTTTGCAcacatgcacgtgtgtgtgtgttactgtgtccATTTCACCAGCACTGTCCAGTGTCTTCCTCAAAACCCTCATAGCATTGTCACTATACTGGGTGTACATCGATTCAACGGAGAAGCATTTAAAACCAGTAGTAGCATTGCGGCAAAACATTCTGTTTTTGgctgtgcgtcccaaatggcaccctaatccctatacagtgcactacttttgacctgggctcATAGGGaatcccatagagctctggtcaaaagtagtgcactatatagggaatagggtgtcatttgggaggcagacatcgtttttttttttttaagaatgtgcaAGGTGGTGTGTTACTGTATATGGTTGATTTAGACTTAGTCCTTGTTTTTCCCGTTTAACAAAAGAAATGGAGGCCTCCGGATGTAAGGTGATATCAGATTGCACATATCTAGTAGTGGTGTTGTTGGTGTAGCTAGGTGGCTGTGTATGTAgctgtgtgttggttgttgcACCAGGAAGTGTTGTAATCGTGAAAGTCGAACTCACTGTTCAACAGCCTCCCATGTTAACAAACAGTCATGGCTGGTTAGCTAGTGCACGCTGGCTAACAGTAATTTCACACTACAACTCACTCATTGCCTGGGGTAATTCCTAACTTCCATTTAAGTCAAATTTTCACTTAGTCATGCAACAGAGGAGGGTGGATACCACCCAACCAATGGTATATAATGGAAACTATTATCTCCCTTTTGGCTAAGTGCACTTTTACTATTAACCGTTCGTTCATTGTTACAAGATCTTCTCATGGTTTAAAACACGACACATTGAGTGAAAAAGCACGGCTGTTGACTATTATAATAAACCTGTACTTATCTGTATCTAAgaggattttttttcttttttgtatGTTTTAGAAGAGCTACGTTTGCTATTATTATTAAAGTATGACATTTTTACA

Function

GO: NA

KEGG:

id description
K11296 HMGB3; high mobility group protein B3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1987882 lncRNA upstream 188562 38669409 ~ 38669923 (+) True G1735820
TU1987834 lncRNA upstream 230076 38592329 ~ 38628409 (+) True G1735778
TU1988007 lncRNA downstream 78648 38943178 ~ 38955401 (+) True G1735932
TU1988000 lncRNA downstream 101511 38966041 ~ 38982550 (+) False LOC110500354
TU1988001 lncRNA downstream 101511 38966041 ~ 38982550 (+) True LOC110500354
TU1988066 lncRNA downstream 169979 39034509 ~ 39089363 (+) False G1735986
TU1988068 lncRNA downstream 169979 39034509 ~ 39089363 (+) False G1735986
XM_036957769.1 mRNA upstream 118777 38726433 ~ 38739708 (+) False LOC110500344
XM_036957781.1 mRNA downstream 3405 38867935 ~ 38939119 (+) False arrb2b
XM_036957780.1 mRNA downstream 56876 38921406 ~ 38939119 (+) False arrb2b
XM_036957782.1 mRNA downstream 91609 38956139 ~ 38967877 (+) False LOC110500354
XM_021577674.2 mRNA downstream 99612 38964142 ~ 38967877 (+) False LOC110500354
XM_021577673.2 mRNA downstream 104853 38969383 ~ 38986233 (+) True alox12
TU1986976 other upstream 776211 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 811979 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 813419 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 1095227 37760335 ~ 37763258 (+) False cited1
TU1986376 other upstream 1289532 37565428 ~ 37568953 (+) True G1734479
TU1987950 other downstream 3437 38867967 ~ 38924928 (+) True arrb2b
TU1988123 other downstream 314757 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 369134 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 1011226 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1198176 40062706 ~ 40063325 (+) True G1737353

Expression Profile