RNA id: TCONS_00050633


Basic Information

Item Value
RNA id TCONS_00050633
length 2831
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_025763
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54012708 ~ 54238460 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAAATTGATGGTCACTCTGTTTTGGCTTCATGTAGAGGCAGAAAACTTTCAGATGggcaaacatttatttaacactCCACTGATCTGGGATTTATGGCGAGTTGTCAAGTTTAACCCTCTCCTCAGTGAAAATACATGGAAATCTGGCAAAACTGGCAAAGAATACCACCAAAGAACTTTTAACATGTGAGATTCTGTGGTCTGTTCCAACTACTGTTCCACGTCCAGAGTAAACCAGCAGTTATTCATGACCTGCATAGTACATTATATCCCAAATATAAAGAATGGTGGTGGAGCAGCATGCAGGATTGAATGAAATCTGACCACAGCAAAAAACAAGCCCTGTATCCAAGCCCGGAGGAGGGCTGGCAGATCTACAGCTCGGCACAGGATGCAGATGGGAAATGTATCTGCACCGTTGTTGCTCCAGCACAGAACATGTGTAATCGAGACCCACGCAGCAGACAGCTCCGGCAACTTATGGAGAAGGTTCAGAATATCACTCAATCCATGGAGGTGCTAGACCTGAGGACGTACAGAGACCTGCAGTATGTGAGAGATACGGAGAACCTCATGAAAACAGTGGACGGCAAACTGAAGACTGCCTCTGAAAATCCTCGCAGCCTAAACCCCAAGAGTTTTCAGGAGTTAAAGGACAAGGTTACTCAGCTGCTCCCCCTGTTGCCAGTGCTGGAGCAGTACAAGGCAGATGCAAGAATGATTCTGCGGCTGAGGGAGGAAGTGAGAAATCTGTCTCTGGTACTTATGGCCATTCAAGAAGAGATGGGAGCCTATGATTACGAGGAGCTCAGGCAGCGAGTGCTATTACTAGAGACTCGCCTGCACTCCTGCATGCAGAAACTCGGTTGCGGAAAGCTAACTGGCGTCAGTAACCCCATCACCGTCCGTGCCTCAGGGTCAAGGTTCGGTTCCTGGATGACTGACACAATGATCCCCAGCTCTGATAATAGGGTGTGGTCAATGGATGGTTACTTTAAGGGACGTCGTGTGCTGGAGTACCGCACCATGAATGACTTCATGAAGGGCCAGAACTTTGTCCAGCATCTCCTGCCCCACCCTTGGGCTGGTACGGGTCACGTGGTCTACAACGGCTCACTATACTACAACAAATACCAGAGCAACATCCTCATCAAGTACCACTTCCGGTCTCGAAGTGTCCTGGTGCAGCGGAGCCTTAGCGGTGCCGGCTACAACAACACCTTCCCCTACTCCTGGGGCGGATCATCCGACATCGACCTCATGGCTGATGAGAATGGTCTGTGGGCTGTCTACACCACCATTCCCAATGCCGGAAACATCGTCATTAGCCGTCTAGAGCCGCAAAGCCTGGAAGTGCTTCAAACGTGGGACACAGGCTTTCCCAAACGGAGCGCAGGCGAGTCCTTCATGATCTGCGGCACTCTTTATGTAACCAACTCCCACTTGGCCGGTGCTAAAATCTACTTCGCATATTACACCAACACCTCGACCTATGAGTACACTGACATCCCCTTCCATAACCAATACTCCCACATCTCCATGATGGACTACAATCCCCGAGAAAGAGTTCTCTACACCTGGAACAATGGACATCAAGTCCTCTACAACGTCACGTTGTTCCAGGTCATCAAAACCGCTGAGGACTAAGTCATTCagactttacaaacacatttgctcatacacaaatgcacacacactattataacacacacatacacacacttatgtGGAGGGGGGACTAAAGTTGAAACTTTTTTACTGCATTCCAAACTTCATAGAGTGCTATTAATTATCTAATGTTCTGAGGAGAGGAAGATTGGTACTGATAAATGGACGGAGCTTTTATTTTCTTTCCTGTGATGATTCAGCATGAgtactttctttttatttgtggaaaaagatgaataaataaacatcaaaCTTTACCATTTTTCAAGTTTCAActttttctttcctttgtttttttcttttctcctaGATGCTGATGGTTACTAATGGCTGCATACTGtagtagctaaaaaaaaaagaagcttttgTAAATGCCTGATCGctcattatttttaaagaaatctttaACAAAGCCTTCCTAACCTCCAGCTGTAATGAAAGTAGAGATGTGCCACAGCAGGATGAGCCGAGCCTCTCTTGACTGCCTCAGGAAGTGAATTCAGCTCCTGTTTGGTGTCAGCCATCCTGAGGAGAGACGTCAGTCAGGCAGAGCTCAGTGACATGAAGGGCTGAAAGGTGAGGTGGTggaggagaaaagaaaaaaaaattagagaCAGCGGAGGGATGAATAAAAAAGCAACAGCATTGAGTCGGACAGATGAGGCCCTGGGCTACGGTGatgcctgctgctgctgctgttgttgtttgcGCCTGCCAAGTTGCAATCTGTTCCCATCTTGTGATACGCAACTCCTCAACAGGCtgtgtataaaatattaaattagtgATGGCGGGCTTGTCCAGCTTCCTTTTACAATGTGGTTTTTACTTAATATGAGTCAAGTATAGTATccatatttggtttttggctttAGCAGAATTTTCATCATCAGTATGGTCTGCTGGTTTGGTGCAAAATATCTGCATAGGGCACTATTTTTGGACAAGTGTGCACTGGAAAAGAGAGACTGACTGCGGTCTTGGTAAATCTAACTGTACACATGTAAGGTACAGCATCCAGCATTTTAATGGAAAACTTTATCATAAAGGCCCGATCGCTCCAAGAAAATTAGCTGTAAAGatacattgattcattcattcattttcttgtcggattagtctttttattaatctggggtggccacagcggaatgaaccacc

Function

GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2882 Acts upstream of or within neural crest cell development. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including midbrain neural tube; nervous system; optic cup; optic vesicle; and pancreatic system. Orthologous to human OLFM2 (olfactomedin 2).

Ensembl:

ensembl_id ENSDART00000154542

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052799 lncRNA upstream 360307 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052382 lncRNA upstream 363082 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00052381 lncRNA upstream 380361 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052380 lncRNA upstream 1202998 52806272 ~ 52809710 (+) False XLOC_025750
TCONS_00052379 lncRNA upstream 1620503 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00052800 lncRNA downstream 32243 54270703 ~ 54271345 (+) True XLOC_025766
TCONS_00052384 lncRNA downstream 45307 54283767 ~ 54284185 (+) True XLOC_025767
TCONS_00052801 lncRNA downstream 51218 54289678 ~ 54303624 (+) True XLOC_025768
TCONS_00052802 lncRNA downstream 94266 54332726 ~ 54336639 (+) False XLOC_025769
TCONS_00052803 lncRNA downstream 94287 54332747 ~ 54336639 (+) True XLOC_025769
TCONS_00050632 mRNA upstream 93245 53773256 ~ 53919463 (+) True XLOC_025762
TCONS_00050631 mRNA upstream 490500 53511936 ~ 53522208 (+) True XLOC_025760
TCONS_00050630 mRNA upstream 563271 53352018 ~ 53449437 (+) True XLOC_025759
TCONS_00050629 mRNA upstream 662161 53317040 ~ 53350547 (+) True XLOC_025758
TCONS_00050628 mRNA upstream 738423 53240562 ~ 53274285 (+) True XLOC_025757
TCONS_00050638 mRNA downstream 315471 54553931 ~ 54567961 (+) True XLOC_025770
TCONS_00050639 mRNA downstream 334265 54572725 ~ 54577985 (+) True XLOC_025771
TCONS_00050640 mRNA downstream 343527 54581987 ~ 54589823 (+) True XLOC_025772
TCONS_00050641 mRNA downstream 505609 54744069 ~ 54752364 (+) False XLOC_025773
TCONS_00050642 mRNA downstream 505630 54744090 ~ 54749171 (+) True XLOC_025773
TCONS_00050620 other upstream 1183702 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 1392533 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 3937518 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 4880231 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 6552105 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050662 other downstream 1060583 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 1245053 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 3397914 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 3587479 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 3759530 57997990 ~ 57998559 (+) False XLOC_025817

Expression Profile

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