RNA id: XM_021577674.2


Basic Information

Item Value
RNA id XM_021577674.2
length 3459
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110500354
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38956139 ~ 38982550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtgaagacatcaaaaccgatgaaataacacatatggaatcatgtaaccaaaaaattttttaaacaaatcaaaatatattttctatttgagattgttcaaagtagccacccttataGTGTAACCTTATGAACATGTCCAATGAAAGCATTTACAACAGCGGATTCATTTTCTAGAGTTGATTGTGCAGTTTGTTCTGAGGCGTGTGAAGGATGCGACCGTAATTACATGCATTTCAGTCATCGTCTCTTAGCTGAAGCTCAGGTGATAAAGCTACTGGACGAACACCTGAGTGTGTTCAGTGGTGTAATTTTACCCTTGTGCTGTTGAGGACTATTTAGACTGGTTTAGAGAGGTGTAATACTCTGGGAAGATTTGTTTATAGCGTAGGAGTGTTTTCCATGTGTGCTGTTGTTTTCTGCTTTTGGTTAGCTCAGGCAAATTTGTATCCTTAGTGATATGTACTAGACTGGCAAGCCACCTTTTTGGAATACATTTGCTTCCTGAATCTGTTTCTCTttatccccatctctccccatctttctccaGGTATCCTCCTTCTGTACAGAGGCCCTGACCATATGCAACTCCCTCCTCCATCCGCACACCCCCTCACCCTCAAACCCCCCCAGGCATCCAACCTCCTAGGGGGGCCCACCCCAGGACCTCCCTTCCCCAGCTCCCTGGACAACCACCTACCTCTGGTTCTTCCAGGGCTCTCCGGCGGCCAGAGACCCGTTTTCATCCTCTACGACAAAGAAGAGGCATCGGATGTGGAGATTTCGCTAGACAGCGATTCGGACGATGGCGTGTTAATCGTGCCACAGAGGATGCTGATGTTGGAAAGCCAAGATGGCACCAGCGCTGCGGCCACTCTTCCCGGGTCTTCCTTAGCACCAGGTGGCGTCACACTCCCCATGCCCTGTCCAAGGGGCGACCCGGGTGGGGacatctccctccccctttccaacgaccttccctctacctccctccctcacctcccctcctccaccccaaaCTACACCGTCAACTTGTTCCCTCCAGCTCCGCTAGTCTCTCTGGTTCCCCCTCTCAACTCCACCGGTGTGGCCCAACTCGGGGAACCCTCTGTGGGGTTAGGAGTCGGGACTGACTCCCTGCCTGGAGCCCAGCTCCAGCAGATGTTGCTCCAGGGCCAGCCTCCAGCACCAGGTCAACCTACAGCACTGGATCTCCCCATACAGGTTCACCAGAACCAGTTAGCCCAGTCCAGCAGAGCCCTACAGCAGCAACATTAATCCGTTGACGAAGATCACACTGTCATTCATATCAACCGCTCTGATGAAGAAGAGGATGAGCtggaagaggaagagagcgaTTTCCCAGATGAGGATATTTGATGATGAAGACCTTGATGATTATGAGGCggaagaggggggagatggaggatgaagaagagggagagattcGGCTGTTGGacggagaagggaggagaggcgGGATGGGAGGACGAGAGGAAGGAGAGGTGCTCAGAGGgtaggtggaggagggagggataggaggatTCCGAgtggagagcgagggggagggagggataggaggatTCCGAGTGGAGAGCAAGGGGGAAGGAGGGATAAAGGCTCAGGAGGTAGAGCGCATCAGAGtgctggaggaagagagagagggagacgaggATGCCAATGAAGGAATGAATGATCCGACCATGCCTCAGATTCTGTGTGTGACGGGCGGAGCTCTGAGAGAGAGCTAGCTCAGGCAGAGCTAGATGAGGAAGGGGCCGGGCATGGGCAGAAAGTGAGGTCATGGGAGCAGAAGGGAGGCAATCGGCTGGAGGGAACGTCCTCTTCTGAAGACGGTCCTGCTGCTCAACACCAACAGGAGGCGGAGCCTGCACCGGAAGTGAGGGTGGACGGTGACGATCAGCCATCCAATCAGGAGGGAGAAATATCCAAACAGGGCGGCGACAATACCGGACAGGATATGAGGTCATCAACAGCTCCGagggagagcaagggagaggggCCTGaacgagagaaagaaggagaggatgggagagggatgaagagagagagaaaggaggaaggaacaggacaggaacagagaAGAAAAATGTAAGAAAAAGACTCTCAAACACACTGTTCGAAATGTGTCCATATAACCATTACACCACTCAGGCTTTTTATACTGTACAACCCACACATTTCCCATGTGTTACATGGACATGGCTTAGGGGGAATACTTTGCAGATATACAAATGATGTTGGTTAATGACCGTTGTGCATTTCCTCTGCCACAGAATTGGCCAACAAGAGTTATCTAACAACCCACACTCTCTCTCAGTTGGATGAAGAAGCGATGGCGTCCATGCTAGCCGACATCGTAGCCTGCCCTCcagacaatgtagaaaatgtgcCCTCTGCCCATCCTAAACAAGGCCAGGCACGGCTCCATCACAATACCTTCAGAACAACTCGATTTTTAGCCCCTAGTCTCACACATTCTTTCATTATCAACATACTGCTAAGACAATGTTCAACACATTGAGGCTGGGTTTAGAATTGGCaccccaattctgatattttttccactaatttgtctgttttatttttattttattttttacacccctttttcttcccaatttcatggtatccaattggtcttgtctcatcgctgcaactcccgtacggactcgggagaggtgaagttCGAGAgctgtgtgtcctccgaaacacgactcAACGACtcaactgcttcttgacacaatgcccacttaacctggaaagccagccgtaccaatgtgtcggaggaaacactgtacacctggtgaccgtgtcagcgtggaGTCTCTAGTGCTCAATGGGAtgaggacatccctgccggccaaaccctcccctaacctggacgacgctgggccaactgtgcgccatcccatgggtctcccggtcgcggtcggctgcgacagagcctggactcgaacccagaatctctagtggcacagcttagcactgcgatgcagagccttagaccactgtgccactcgggaggcctctcactaattggtcttttgaccaatcacatcagatctttttcagagctgatctaatTGTTCAAAAGACGGATTTAGTGAAATAAATATCAgaactgggctgcctgtgtaaacacagccagccATAGAGGTTGGAATTAGATCGGTCTTAAACGATCACGTTTCGTCTTGAATGCAGGACAGTAGATGCATTTGTTATACAACTCTCTGGgctattattatttaaaaaacgcTTCAATTATTTTACATCAAAACATAAAGACTTTGCAGCTCGTACTGGTGTGTGCTGTGTTACTGAGTGGAGTAGTCACGTGTTTTTGGATctttatagacagtatatgactTCTGTTCTTTTTGTTCTCACGTCTTTTCTTACAAAATAAACGTCAAATGCAAACCTGTTGAAACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988007 lncRNA upstream 8741 38943178 ~ 38955401 (+) True G1735932
TU1987882 lncRNA upstream 294219 38669409 ~ 38669923 (+) True G1735820
TU1987856 lncRNA upstream 335990 38627784 ~ 38628152 (+) True G1735795
TU1987844 lncRNA upstream 355017 38607190 ~ 38609125 (+) False G1735784
TU1988066 lncRNA downstream 66632 39034509 ~ 39089363 (+) False G1735986
TU1988068 lncRNA downstream 66632 39034509 ~ 39089363 (+) False G1735986
TU1988070 lncRNA downstream 66632 39034509 ~ 39089363 (+) False G1735986
TU1988073 lncRNA downstream 73626 39041503 ~ 39089363 (+) False G1735986
TU1988067 lncRNA downstream 118628 39086505 ~ 39178178 (+) False G1735986
XM_036957781.1 mRNA upstream 25023 38867935 ~ 38939119 (+) False arrb2b
XM_036957780.1 mRNA upstream 25023 38921406 ~ 38939119 (+) False arrb2b
XM_021577670.2 mRNA upstream 99612 38857116 ~ 38864530 (+) False hmgb3a
XM_021577671.2 mRNA upstream 99612 38858485 ~ 38864530 (+) True hmgb3a
XM_036957776.1 mRNA upstream 224434 38726453 ~ 38739708 (+) True LOC110500344
XM_021577673.2 mRNA downstream 1506 38969383 ~ 38986233 (+) True alox12
XM_021577681.2 mRNA downstream 35861 39003738 ~ 39010433 (+) False zgc:92664
XM_021577680.2 mRNA downstream 35861 39003738 ~ 39010438 (+) False zgc:92664
XM_021577678.2 mRNA downstream 35861 39003738 ~ 39022864 (+) False zgc:92664
XM_021577679.2 mRNA downstream 35861 39003738 ~ 39022864 (+) False zgc:92664
TU1987950 other upstream 39214 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 881868 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 917636 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 919076 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 1200884 37760335 ~ 37763258 (+) False cited1
TU1988123 other downstream 211410 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 265787 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 907879 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1094829 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1433627 40401504 ~ 40403685 (+) True LOC110500409

Expression Profile