RNA id: XR_002470092.2


Basic Information

Item Value
RNA id XR_002470092.2
length 2342
RNA type mRNA
GC content 0.43
exon number 7
gene id zgc:92664
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39003738 ~ 39022864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGCGCACGTTAAATCTTGCGTTTGTCCACATTGTCATTTGTGTACGTCATTTATTTTTAGCTACACATTTCTGAttattgcaacaacaaaaacataagaTCCGTTTTAACACAATTCACAGGCTCACTGAAAACAATTGAGGACTGcagacaaaaatataaatattgtaaGACGTGGACGAAGTTGGTATTTGTATTAACCGCTGAGCCTGCAGTGCAAGCAGGCTAACTAACCTGAAGCGTAGCTGAAGCCTAGCTTCTCTAAACGGCATTATTCACAGGAAAATCTGCATCTGTTCAGCaactacaaaaataaaaatgactTCAGCCTCAACGAAGGTTGGGGAGATCTTCTCAGCAGCAGGAGCTGCTTTCACCAAGTTAGGGGAGCTGACCATGCAACTGCACCCCGTAGCTGACTCCAGTCCCGCAGGAGCTAAGTGGACGGACACTGAGATTGGGCAGCTGAGATCGGCCGTGGTGAGGTTTGGTGATGACCTGAACTCCCTCAGCACTGTTATCAAGGAACGCACCGTGGTCCAGATTAAAAGTACAGTGAAGAGGAAGCTCTATGACGAGACTGGGATGCCCATTTCCACCGACTCCCCAAAAAAGACCGCCAAGAAGACTGCTGTTACCATGGCCACCACGGCAACCCCAACTGTCATTGCTGTGCCGACCTCACAGGTTGTCATGAAGGCAGGTGTCCAGGGAAATGTGACTCTGGCCATTCCCACCATGAAGAAACAGAAGTCTGCAGCAGATGTGACTCTGAGTGCTCTGAATGACTCTGACGTCAACTCTGACCTGGTAGACATAGAGGGACTGGGAGAGGGATCCAACTCCAAGAAACTCAACTTCGATCAGGggtctacagacaatcacggactacaaaggaaaaaccagccatgtcgcggACATCGTCTTGTTTCCGgtcaagctaaacaccttcgcccgctttgaggataaaaCAGTGCCACCTACACGGCCCgttaccaaggactgtgggctctccttccctgtggccgacACAACCTGAACCTCGACTCCAGCTTCATTATGAACTCGTGACCTGCCGCCCCTCTCTCGTTGACCAAGATGTTTTCAttagcaccctatttcctacatagtgcactacttttgactggagccttatggaccctggtcaaatgtaATCCACTAAATAGGGATTAGAGTGCAATTTGAGACGCAGCCCCCGACATCTATGGACAACAGCCGAGATCCTTCAGATTTGATTTGGCGGATCTCTgggtgcatctgaaatggcaccttattccctgcTTTTTTTAGCCAAGGCCTATGAGGGGTGCAAATTTCTCTTGCATGAGGAATGTGTTGGATGTAAATAATggtatttttatttattcataCATGATTGATTTGTACTACACAAAAAGCTAATGTGCAGAGCTGCATGGCCAAGGACTACAGTGTGTAGATTTTGTCATCTTGGTTTATGTCAACTATATGTGGGATAGGTGGCCCTGCAAATTCCCATTTGACAATGATGCAACTGCAAACTTGTTTCCGGAATCATGTACTTGTGAACCCAGTGTTGAGCTCACCAGTAAATTAAACTGGTATTTGAAAAGCATACTGGATAATATAGATGAACACAATTGTGTCAAAGGACAGGAATTAGTTTAGTGACGTTTTCTGTTTGAAACAGTGGGATTATTTTATTGTTCAAAACATGACCCATGTAATTTTGGGGGGAAATATTTCTCAGTAAGTTACTGACAAACATTTGTAGTTTTATATAGAGGCTTACTCTAAAGACAATCAAATGAACTGTGCGATTTGCTGAATTATGTTGAATAAATTGACAAATTACCAACTAGAATTTAACTTTCAGGAGTCATGTCACTCAATGTGTAGTCTTTATTGAAATTAGATTTTATACAATTAAACACTGGTGGGCACAGTAagtgtaaaaataaaaaccaCCAAATAGGTGCAGTGATGTTTTAGTGTCAGCCATATTAGTATGGCTcacacccctggagcaaattaggattaagtgcctttgCACTAGGGCACagagatttttcaccttgttggtttaggtatttgaaccagcaaccttttggttactggctcaaaGCTCGAACTGCTAGAGTGATTAAATACTAGGGCTGTGAAATCAGGCCAATTTCCAGCCATTTATGCTTACACAATATCCCCAACTTTATAAAACGAAGTAATATATTCAAATTATCACCAACCCTCAATAGTACACATAATGAGGGACAGCCATGGACATAGTAAAAATATGCCACTGTAATAGCACTAACACAGGGCTTCTTCTGATAAAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988000 lncRNA upstream 21188 38966041 ~ 38982550 (+) False LOC110500354
TU1988001 lncRNA upstream 21188 38966041 ~ 38982550 (+) True LOC110500354
TU1988007 lncRNA upstream 48337 38943178 ~ 38955401 (+) True G1735932
TU1987882 lncRNA upstream 333815 38669409 ~ 38669923 (+) True G1735820
TU1987856 lncRNA upstream 375586 38627784 ~ 38628152 (+) True G1735795
TU1988066 lncRNA downstream 11645 39034509 ~ 39089363 (+) False G1735986
TU1988068 lncRNA downstream 11645 39034509 ~ 39089363 (+) False G1735986
TU1988070 lncRNA downstream 11645 39034509 ~ 39089363 (+) False G1735986
TU1988073 lncRNA downstream 18639 39041503 ~ 39089363 (+) False G1735986
TU1988067 lncRNA downstream 63641 39086505 ~ 39178178 (+) False G1735986
XM_021577673.2 mRNA upstream 17505 38969383 ~ 38986233 (+) True alox12
XM_036957782.1 mRNA upstream 35861 38956139 ~ 38967877 (+) False LOC110500354
XM_021577674.2 mRNA upstream 35861 38964142 ~ 38967877 (+) False LOC110500354
XM_036957781.1 mRNA upstream 64619 38867935 ~ 38939119 (+) False arrb2b
XR_005038594.1 mRNA downstream 115678 39138542 ~ 39154346 (+) False LOC118942927
XM_021577689.2 mRNA downstream 156283 39179147 ~ 39211035 (+) False nat16
XR_005038595.1 mRNA downstream 156283 39179147 ~ 39211035 (+) False nat16
XR_005038596.1 mRNA downstream 156283 39179147 ~ 39211035 (+) False nat16
XM_036957789.1 mRNA downstream 205784 39228648 ~ 39237917 (+) False LOC110500362
TU1987950 other upstream 78810 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 921464 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 957232 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 958672 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 1240480 37760335 ~ 37763258 (+) False cited1
TU1988123 other downstream 156423 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 210800 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 852892 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 1039842 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1378640 40401504 ~ 40403685 (+) True LOC110500409

Expression Profile