RNA id: TU1988129


Basic Information

Item Value
RNA id TU1988129
length 1376
lncRNA type read_through
GC content 0.38
exon number 3
gene id LOC118942927
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39138542 ~ 39154522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCCTTTAGTCACTTCTAAGTCATTGTATATACAGCGTAATATGCACCTCAGCTCTTGTTGAATGTCATGTTAAGATAGCGGTTGCCCCTGAGCAATCATGGGTCTCAAGAGAACCCATGCTATGGATGTACTATGGTGTTTTCTACTATTGATGGCAGTTATAGAGAATAACCCTAACCCACCTTATGGTGGCCGAGTGGGCTTGCAGTACGAGGCAGAGGGAGACTCCTCCACCGTCTCCCTACCATGGAACACAGGCACAGGTGTCCATCCAGGAGACCATCTACCAGTTCCTGGGGGGCTGATAGGGACGCAGACACCTGATAGGGACGCAGACACAGACACCTGAACCGACCGACCTCTTCAGGGCAACGTTTTGCATTGAGTGACCCTGGCAGCCAATCAAAGGCGGAAAGAAGGACAGAATGccacatttaaaatgtattatatactgtatttctttGTCGTCAAAATTTGCAAAAATTAGTCTAGCGCTTTTGGAATTTCTGATGCTCCCAGAATGTCTAGCTTTCATTTCAAtgactgttagcaagctggacaaaagtgaagagactataaatgaAGGTCCAATATAATTTCTACAAACTTTTGATTTGGTTTTAGTAATTTCAATGTCGATAGACATCGTTTTGCTgcgacaaaaaaaacaaaaaaaaaaaacagattgtaTAGGCTCTCGGGCCTTGAGTTTGACAATTGTCATTCAACCGGTTTAAAAAAGCTGTAAAATATGTTATACAGTGGTTGCACTTTATAAACTGGTGTACTTTCATGGTAAATTACTACATAGGGATACTAGCTAATGTTGACTTTAAAAACCTATTCCATACTTAAATACCTTTTTTCAATATTGCCTGACAGTTTATGATAAGCAGACCGGAGATAAAGTCACTCTGAGATGTCTTGGATCATCCTTTAAATCAGTGTTTCATCGACCACCGGGAAAAAAACAGACTGGAACAAGATCTGTATTGGAAGGTCTCCTCTTTGGGAGCGACGACTGAATGAAACAGCAAAAACTGTTTTACCAATGATATGATGCAACTTATGCCAGTTTGACAATTAGCAGTACTCATTTTTAACGTTGGTACTAAAGCTAATGAATAATGTTGTAATATCACATGTATATAATAACATGGCCTAACAACGTGTCTGTATACAGAGAACAGATATTGAACACTCAAAACATCTTTGAAATGTGTAATAAAATCAAAGATTTATTTCCTGACTCATTTTTGTAAACTGCATAATATCAAAGCAACCAAAAATGACAAACCACAATCAAATGAAACATGAATGAAGGTTAAAGTGAGACATTTCTAATTAAAGAACTTAAGTACTGCTGTACTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988173 lncRNA upstream 4080 39143710 ~ 39144316 (+) True G1736065
TU1988074 lncRNA upstream 30169 39086505 ~ 39118227 (+) True G1735986
TU1988147 lncRNA upstream 42537 39103955 ~ 39105859 (+) True G1736042
TU1988066 lncRNA upstream 59033 39034509 ~ 39089363 (+) False G1735986
TU1988204 lncRNA downstream 36920 39191442 ~ 39191854 (+) True G1736093
TU1988248 lncRNA downstream 141540 39296062 ~ 39302368 (+) True G1736133
TU1988269 lncRNA downstream 186116 39340638 ~ 39362957 (+) False G1736154
TU1988270 lncRNA downstream 186116 39340638 ~ 39343652 (+) False G1736154
TU1988271 lncRNA downstream 186116 39340638 ~ 39347163 (+) True G1736154
XM_036957784.1 mRNA upstream 125532 39003738 ~ 39022864 (+) False zgc:92664
XM_021577689.2 mRNA downstream 24625 39179147 ~ 39211035 (+) False nat16
XR_005038595.1 mRNA downstream 24625 39179147 ~ 39211035 (+) False nat16
XR_005038596.1 mRNA downstream 24625 39179147 ~ 39211035 (+) False nat16
XM_036957789.1 mRNA downstream 74126 39228648 ~ 39237917 (+) False LOC110500362
XM_036957788.1 mRNA downstream 74129 39228651 ~ 39237917 (+) True LOC110500362
TU1987950 other upstream 223468 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1066122 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1101890 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 1103330 38043091 ~ 38045066 (+) False G1734960
TU1986710 other upstream 1385138 37760335 ~ 37763258 (+) False cited1
TU1988123 other downstream 24765 39179287 ~ 39209485 (+) True nat16
TU1988209 other downstream 79142 39233664 ~ 39289670 (+) True G1736098
TU1988631 other downstream 721234 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 908184 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1246982 40401504 ~ 40403685 (+) True LOC110500409

Expression Profile