RNA id: TCONS_00050637


Basic Information

Item Value
RNA id TCONS_00050637
length 275
lncRNA type retained_intron
GC content 0.48
exon number 2
gene id XLOC_025763
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54012708 ~ 54238460 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTTTGGCTttgtgttttgtggtatttaacAGGTTCAGAATATCACTCAATCCATGGAGGTGCTAGACCTGAGGACGTACAGAGACCTGCAGTATGTGAGAGATACGGAGAACCTCATGAAAACAGTGGACGGCAAACTGAAGACTGCCTCTGAAAATCCTCGCAGCCTAAACCCCAAGAGTTTTCAGGAGTTAAAGGACAAGGTTACTCAGCTGCTCCCCCTGTTGCCAGTGCTGGAGCAGTACAAGGCAGATGCAAGAATGATTCTGCGGCT

Function

GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2882 Acts upstream of or within neural crest cell development. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including midbrain neural tube; nervous system; optic cup; optic vesicle; and pancreatic system. Orthologous to human OLFM2 (olfactomedin 2).

Ensembl:

ensembl_id ENSDART00000138035

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052383 lncRNA upstream 111353 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00052799 lncRNA upstream 570924 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052382 lncRNA upstream 573699 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00052381 lncRNA upstream 590978 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052380 lncRNA upstream 1413615 52806272 ~ 52809710 (+) False XLOC_025750
TCONS_00052800 lncRNA downstream 44175 54270703 ~ 54271345 (+) True XLOC_025766
TCONS_00052384 lncRNA downstream 57239 54283767 ~ 54284185 (+) True XLOC_025767
TCONS_00052801 lncRNA downstream 63150 54289678 ~ 54303624 (+) True XLOC_025768
TCONS_00052802 lncRNA downstream 106198 54332726 ~ 54336639 (+) False XLOC_025769
TCONS_00052803 lncRNA downstream 106219 54332747 ~ 54336639 (+) True XLOC_025769
TCONS_00050632 mRNA upstream 303862 53773256 ~ 53919463 (+) True XLOC_025762
TCONS_00050631 mRNA upstream 701117 53511936 ~ 53522208 (+) True XLOC_025760
TCONS_00050630 mRNA upstream 773888 53352018 ~ 53449437 (+) True XLOC_025759
TCONS_00050629 mRNA upstream 872778 53317040 ~ 53350547 (+) True XLOC_025758
TCONS_00050628 mRNA upstream 949040 53240562 ~ 53274285 (+) True XLOC_025757
TCONS_00050638 mRNA downstream 327403 54553931 ~ 54567961 (+) True XLOC_025770
TCONS_00050639 mRNA downstream 346197 54572725 ~ 54577985 (+) True XLOC_025771
TCONS_00050640 mRNA downstream 355459 54581987 ~ 54589823 (+) True XLOC_025772
TCONS_00050641 mRNA downstream 517541 54744069 ~ 54752364 (+) False XLOC_025773
TCONS_00050642 mRNA downstream 517562 54744090 ~ 54749171 (+) True XLOC_025773
TCONS_00050635 other upstream 155686 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 1394319 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 1603150 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 4148135 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 5090848 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050662 other downstream 1072515 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 1256985 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 3409846 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 3599411 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 3771462 57997990 ~ 57998559 (+) False XLOC_025817

Expression Profile

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