RNA id: XM_036957788.1



Basic Information


Item Value
RNA id XM_036957788.1
length 1949
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110500362
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39228648 ~ 39237917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtgtgtgtgtgtgtgtgtgtgtgtagttcaaaTGAAAGCAGAATGGGAAAACCAAAGTAACCCGTGAACATGTCAGAAGCTGTATCGTGACTCTGTTCACTTCCTCTTCCTCGTCCTttcgagtgagtgagtgagtgagtgagagtgagtgagagagagagagggagatacagagatacatacagcgAAATCATATGAAAGGTGCTAAGGCCGGAAGTGTTCGGAAAGAGGAAGTTGAGAGTTGTGAGTCAGAGACAAGAAATTGGTGTGAAGACAGAGATACACTCAGAGAAACAAGGCATGGACAAATTAGAGTAAGTATGGTGGAGTGGAAAAAAGgacagaggtaaaaaaaaaaaaaaaacaacggaTGAAACTGAACTGGAAAACACAACAAAAAGACAACAAgtgaagaggaaaggagaaggcTGAACATTGCGACAGATGACAGAGTCGGATATGAGAAAACGCTGTGTCGGCACTCTTCTGGTCCTCATGCTGATACAGACAGGCATGACAGACAGTGGGATTTCTGTGTCTCACAAATGGCATGGAGACCACCTATCTATCACCTGTCGTCTCATGGGGGACAAAGACACTGTTTCTCAGATCAACTGGGAGATGACCAGCAGTTCGaaccacaccaccaccagatTGAAACTGGGCATCTTCCACCCCGTGTTTGGTACCTACGTGGTCCCGGAGTACAACGATACTGTGGAGATCCAGGGAAACGCCTCCAGCGGCCATTACACGCTCAGGCTGAGAGGTAGCACTGTGTTGGAGGAGAGTCAGTTCTGCTGTAAATTCATGACCTTTCCCTCTGGAGGGCTGGAGCACTGTACAAATACCAGGATTAATGAAAGCACAGAGGAGGCCCAGGTGTCAGAAGGCCCACAGGGTTTACTAGAGGAGAGACAAGTGGAGCAGTGGGCTCTGCTAGTAATGGGACCTACCATCTGTCTCCTCAGTATCGCGatctctctctactactgctTGAAGTATTGCTGCAGACACTGCTGCCGCAGGAGGCGAGTGTTCGAGGTGGAGACTTATCTGACAGACCAGCACACAGACTCGGAGGAGGTCACAGAGGAGCCACCCCATCAacccccccttccctcaccccctcccctccagctccagGGTTTTGACCCCTCTAAGCTCTACACTAAGATCAAGCAGGACCTGCTGTATGGACGACTGTGGAAGGCCTACCAGGGGACAGCTAAGGCCTGGGGCCCCACAACACAGCAGGGTCCACACCAGCAAGGGCCACAACAAGGGGCAGAACTAGGGCCACAAAAGGTCTATTTTCTTCTGGGGGATCATCGGGTGTCACAGAGAGAGGAATCAGAAGAACCAGAACTAGAACCTAATCTAGAACAAGAACAAGAACCTCAACCAACCCTTGAAAGAACCGTGGAACCACAGACTGAGCCTGAACCTATCCATCCTTTAGCCCTGGAACCTGGAACACAGATGGAGGTTCAAGAACCAGAATGTAATTTAGAACTAGAACCCAACTTCCCATCAACCCTTTCTGCACAGAGGGAGGAACTGGAATCATACATAGGAACAGAGAAAGAGGAAATTGAAGAAACCAGAGACTAACCCTTCAGCAAGGAGGTTCATGAAGGgaaggtgtgttgtgttgttgtgtgtgtgtgcgggccgtgcgtgtgtgcgtgtgtacgtgtgtgttgggAGGAATAATGCACTGTTGACATTGGGTGAATAACCCTGACCTCCTAAGGTTAGCTGTCAATCAATACGATTAATAATTATTGCCCCAGTGAGAAATTTGGAGTAAAAATTAAACTCACAGGTAATCGCCATGGTTTTTTGTTTACTGTGAACATCGTACGTGTGGTtagacgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1988204 lncRNA upstream 36797 39191442 ~ 39191854 (+) True G1736093
TU1988129 lncRNA upstream 74129 39148396 ~ 39154522 (+) True LOC118942927
TU1988128 lncRNA upstream 74260 39148396 ~ 39154391 (+) False LOC118942927
TU1988173 lncRNA upstream 84335 39143710 ~ 39144316 (+) True G1736065
TU1988147 lncRNA upstream 122792 39103955 ~ 39105859 (+) True G1736042
TU1988248 lncRNA downstream 58145 39296062 ~ 39302368 (+) True G1736133
TU1988269 lncRNA downstream 102721 39340638 ~ 39362957 (+) False G1736154
TU1988270 lncRNA downstream 102721 39340638 ~ 39343652 (+) False G1736154
TU1988271 lncRNA downstream 102721 39340638 ~ 39347163 (+) True G1736154
TU1988336 lncRNA downstream 212943 39450860 ~ 39451178 (+) True G1736209
XM_021577689.2 mRNA upstream 17616 39179147 ~ 39211035 (+) False nat16
XR_005038595.1 mRNA upstream 17616 39179147 ~ 39211035 (+) False nat16
XR_005038596.1 mRNA upstream 17616 39179147 ~ 39211035 (+) False nat16
XR_005038594.1 mRNA upstream 74305 39138542 ~ 39154346 (+) False LOC118942927
XR_002470095.2 mRNA upstream 205787 39003738 ~ 39022864 (+) True zgc:92664
XM_021577692.2 mRNA downstream 7914 39245831 ~ 39256014 (+) False nat16l
XM_021577693.2 mRNA downstream 7914 39245831 ~ 39256014 (+) False nat16l
XM_021577691.2 mRNA downstream 7914 39245831 ~ 39256597 (+) True nat16l
XM_021577695.2 mRNA downstream 84948 39322865 ~ 39331908 (+) True LOC110500364
XM_036957793.1 mRNA downstream 182213 39420130 ~ 39453254 (+) True zanl
TU1988123 other upstream 19166 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 303723 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1146377 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1182145 38045108 ~ 38046506 (+) True G1734961
TU1986951 other upstream 1183585 38043091 ~ 38045066 (+) False G1734960
TU1988631 other downstream 637839 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 824789 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1163587 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 1314094 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 1755238 40993155 ~ 40997320 (+) True G1738057

Expression Profile


XM_036957788.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

XM_036957788.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036957788.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.