RNA id: XM_021577695.2


Basic Information

Item Value
RNA id XM_021577695.2
length 4392
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110500364
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39322865 ~ 39331908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTGCCGGTGATAACTCACTGAAACAGAAGCACAGCGAATGAGGCAACAGTAAGAAAACCTGCGGTGCTGTCCGTGGTAATACTCACTGAAACAGACGCACAGCGAATGAGGCAACAGTAGACAAACCAAAAGGGAGAAATAACTTTCTACTTTATACACACTTCCAAACAACACCGAGCTTTATTTGTGTTGAGTAGACATTGGTGTGTTGAGTTAGAGTAACACGTTGAATTAGAGAGATTTGAGGAGTGACAAGGAGGAGAAAGTAGCCTATCTGGTTTCACCGCAAGACACCAGGAGCATCACCTTCCCTCGCCCCCTCTTGTCCTTTCTGTGTGGTCATGATGTGGTCCCACTTCGCCACAAGTGCCCTTATCCTACTGGTTGTCTTGTTGAGACTTACCCTAACCCTCCCGCTCACCGCCTCCGTGGTGACCGAGACACACAGCCCCGGCGACAGCCATGCTCCTTCCCCTCTTGGACTTAGGCCAACCGAGGGAGAGAATGAAGGGAGGAAGGGCAGActtccacagagagagagagcagaagaggaggatgagcttTTTGGAGGCATGGACCCCAAAACATTAGCAGCCGTTCTGCTGGAGGCGATGAATAAGCCACACGGGGAAAGGAGGAACGGTGTGGAGGATGGGCGcaaggaaaaggagagaggaaaagaggagaatgagagagagaggcaggaggaggagaagggagaggaggtgagagccgCATTGGATGAGGAGGGAGCAGACCGAGACAGGGACGGTCGCGAGGAGCTTGAGCTGGTAATGGCAGCCGCTGCGGCGCAGGGcaaggaggagcgagagaggaatgaggaggaggaggaggagaggaagagagcacaggaggaggaggaaagactAACAGAGAAAGTGACTAGCCACACCACCAGCCAGACGATTCCTGGAAAGGAGAAACGACCTCCggcagaaggagaaagaggggaggaggtgggagtGAAGGAAGTGGGGGCCAGAGAAGATGCGCAGCAGGGACCACCCACCTCACAGGAGACCCAgcaagaggaagaagaggagcaacTAAGTCCAGATGAAGTGCAGAACCTACAGAGCATGTTGGAGGAACTGCAGAACTACAACACAGctaacaagagagagagggaggcccaggagcagagagggagagagagcagggcctACAGCCAAGACGACACAGACCAAGCCCTGATCCACAACCAGATAAAACCCAAAGCTAAAGGATACCCCCGAGCCATGTCGAAGAAGCTCAAATGGCAAGAGGAGATGCAGAAAGCCCTGAACATGCCCACTTATAGAGGAGGCAACTTCATGGACGACTTTGACAATCTGGCTCGACCGGCAGctgaggaggatgatgaggaaATGCTGAGCcccgaggaggaagagaggagggcaaaggaggagcaggaggaggtcaGGAGGCAGGCGATGGAAGCTCAGAGGGCCAAAGCCGAGGAGGAGAAGTTGGCGGACATAGCCTCGGACATGCTCCTGCAGTACATGGTCAAACAGGACAAAGGAAAGTACCAGAACAAGAAGACCCTGCTGTCCAACGCAGCGGAGGACAAGCGCTCTGACGAGGAGGTCGTCAGCGAGGACGATGATATTGATCCTCAGACCATTGATAAGCTCATCGAGATCTCCAGTAAGCTCCACCTCCCCGCGGACGACGTCGTTGACATCATCAGCGACgttgagaagaagaagaagaaagacgCTCCTGAGACATTGCCCTGGCAACGACCCCAGCAAAGACCCCTGGTTTACCCAGCAGCCAAAGCCGTCGATGCCCAGCCTTCACACCCCCGATACCCCACCCTGAAGCAGCCTCTCGCGGCCATCAATCCCCTCAAGGCCTGGTTCAAGGACAAATCTTCCATCAAACCCTCAAAACAAGACCTCTGGATCAAACCTCAACAGAAGTCCTTTCGGACTTCCTCCAACTATCCTATAACTACTAACAACAACTATCCCTTCTACCAACAGAAGCCCTATCGAGGCTACTACCCAATTTACTTCCCCCCTCCCAAGCCCAAACCCCTGTTCTATGCCAAGCCTTCCTACATGCTCAACGACCTCCTGTCGAATTCTCTGGACTACGACTTTGATTTCCCCCCCAAGAGGAGGTACCGTCCCTGGGTACAGCCCCGCCCGAGGAAGCCCCCCGCTGCACTCCGGCGGAACCTCTACTACCCCAATTACTCCAACTATCCCAACTACCTCCTCCCCCCACACCCCAGGACATACAACCCCCTACCCGTCCCCGTCCCCATGCCTAAACCTCGCTCGTCCCCACCCAGGGGTCAGGTTCAGCCTCGCCATCGGCATGGTTACTATTACCAAGCGCCCTCAGCACCTTTGGTGACCCGGGACCAAGATTACTATGGGATGCAGGGGATAGGGATGGGGCCGCAGCAGCAAGATAGCAATGAAGACCTGGAGAACTACATTCAACAGGTCTTTATGAAACCCAGGCCTAGGATGTTTCAGtgaaaagagaggaaagagagagagggggcgggaaggagggaggggaaaaggggaggaaaagagaacaatggattttttttttacaccactTACTTTTGATTTCAGGTTTTGCCTTGGTTTTGTCTCTTTAATGTACTGTTAGATTTTTGTCAAAGAGCAACACAAATTCCATGTAGCTTTTTTTTTGTATAGAGGAAAAATGAACTTGCAGATAGAAAAGTGAGGGAGTCAGGATGACACACATCCATTCATTCCTCTTGCTCTTTTCTTTGGAAGATGAAACTGAAGCTGTTGTCCAAAATGACTGAAAGAGGGGCACTAAACCAATCACATAAAGAACTATAGAACATACAGAACCATAGAACACTGACTCTATAGACTCATCTCATCATCCTGGGATTCTGGAAAATATGAGGGAGCGTCGGCATCGTTCAGAAGACCAACATTGAGGGGAaattgcaaatggcaccctattccctatgttgcgCAATACTTTTGTCCAGGgtccatggggctctggtcaaaagtagtgcactatatatatgggatagggtgccatttgggactcagcctgaCTATCATGTTCCAAAATGATCCAAAACTCATACAAGAGACTTACAGTTGTTAACAAATACACACATGTCAATGTTTGGAGCCAAAATGCACAGTCAAGTGTGTTTATATTCCAAAAGACTAGCCATCGCTATTGGAGAAGAGGCCCTAATGGATATAAAGCCTTTACCAATGTGTATCTGTTGTGTTTTATTGTTATCGGTGGTTCCATTGTCACCATTTCAGTTACACGTCGTTGGTTGTTTACAGAAAATGAAGCTTGCAAAAAAAATATCGAATTGGTCCTTTTCAAGAACTCACAGATAACAAACAGTTATCGTCAAGGGCAGAGAAAGTCATTGTTATTGTTACCGATACGCTTGATGATACGGTGCCATACTGTACGCAAATGCAGTCACTATTTATTAATCAAATACATTGTTTGTTTTTTGATTATTTGTTACTTGTCTGTTTTTAATCACTTCTGTTTTGTTATTTCCTGTCGTTATCACAGTGAGTTTGttccaacaacaaaaaactgtaaCATTTTTATGTCAATTGTCCGTCGGCACACTTTTTGATTAACTTATGAATATatgattgtatttatttaatgtaCTTGTAATGTACTTGTAATGTACTTGTAATGTACTTGTGTTTTTTCTACAAAGCAGTGCTAAGATTTACACATTCATACATTCCAAATATTTGTAAGACAAAGTGATTTTAAAGGAAAGAAACTGAAAATActgaaatacagttttatattgcCTTATTATGGTTTCCCCCTCATTTTGCTAAGACTGTTGACTTTGTAAAGGGGGTAGAATTGAGTTAAGCCCTTGTAGAGAAATGGGGTTGTGATTACAATTCCATTCAATCTCAAATTCGATTcacaaattgaaaaaaaaaatgggaaTTTTTCAATGAAACGGACTTGATTTGAAATGGAATCGTCCCTCACATACTCCCGATGAATGAGTGAAATGAAATTAGAATTAGGGAAAAGAAACTGAAAACAGTCCAGGATTTTcactctgttctactgtagagaAACCAATATGTCTCTGTGTTTATGCCTTTAGATGCTGGAAAGGACTGTGATTCAGTATCTCACCACAAACAAAAAAATCATTGTGTTATTGGAAATCAATATCTAATCACCTCCAAATCCTTACTCGTTCAATATTTCCTTGTAAACGAAACCCCAACAAAAAACGTTTTTtcccccgttttctccccaatttcgtggtatccaattgttttagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988248 lncRNA upstream 20497 39296062 ~ 39302368 (+) True G1736133
TU1988204 lncRNA upstream 131011 39191442 ~ 39191854 (+) True G1736093
TU1988129 lncRNA upstream 168343 39148396 ~ 39154522 (+) True LOC118942927
TU1988128 lncRNA upstream 168474 39148396 ~ 39154391 (+) False LOC118942927
TU1988173 lncRNA upstream 178549 39143710 ~ 39144316 (+) True G1736065
TU1988269 lncRNA downstream 8730 39340638 ~ 39362957 (+) False G1736154
TU1988270 lncRNA downstream 8730 39340638 ~ 39343652 (+) False G1736154
TU1988271 lncRNA downstream 8730 39340638 ~ 39347163 (+) True G1736154
TU1988336 lncRNA downstream 118952 39450860 ~ 39451178 (+) True G1736209
TU1988509 lncRNA downstream 372700 39704608 ~ 39705136 (+) True G1736377
XM_021577691.2 mRNA upstream 66268 39245831 ~ 39256597 (+) True nat16l
XM_021577692.2 mRNA upstream 66851 39245831 ~ 39256014 (+) False nat16l
XM_021577693.2 mRNA upstream 66851 39245831 ~ 39256014 (+) False nat16l
XM_036957789.1 mRNA upstream 84948 39228648 ~ 39237917 (+) False LOC110500362
XM_036957788.1 mRNA upstream 84948 39228651 ~ 39237917 (+) True LOC110500362
XM_036957793.1 mRNA downstream 88222 39420130 ~ 39453254 (+) True zanl
trnaw-cca-56 mRNA downstream 238748 39570656 ~ 39570727 (+) True trnaw-cca-56
XM_021577706.2 mRNA downstream 263259 39595167 ~ 39600315 (+) True mpdu1b
XM_021577711.2 mRNA downstream 342064 39673972 ~ 39706202 (+) False acox3
XM_021577712.2 mRNA downstream 342240 39674148 ~ 39706195 (+) True acox3
TU1988209 other upstream 33195 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 113380 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 397937 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1240591 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1276359 38045108 ~ 38046506 (+) True G1734961
TU1988631 other downstream 543848 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 730798 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 1069596 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 1220103 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 1661247 40993155 ~ 40997320 (+) True G1738057

Expression Profile