RNA id: trnaw-cca-56


Basic Information

Item Value
RNA id trnaw-cca-56
length 72
RNA type mRNA
GC content 0.58
exon number 1
gene id trnaw-cca-56
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39570656 ~ 39570727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTCGTGGCGCAacggtagcgcgtctgactccagatcagaaggttgcgtgttcaaatcacGTCGGGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988336 lncRNA upstream 119478 39450860 ~ 39451178 (+) True G1736209
TU1988269 lncRNA upstream 207699 39340638 ~ 39362957 (+) False G1736154
TU1988271 lncRNA upstream 223493 39340638 ~ 39347163 (+) True G1736154
TU1988270 lncRNA upstream 227004 39340638 ~ 39343652 (+) False G1736154
TU1988248 lncRNA upstream 268288 39296062 ~ 39302368 (+) True G1736133
TU1988509 lncRNA downstream 133881 39704608 ~ 39705136 (+) True G1736377
TU1988572 lncRNA downstream 205704 39776431 ~ 39842962 (+) True G1736434
TU1988619 lncRNA downstream 287892 39858619 ~ 39858919 (+) True G1736473
TU1989571 lncRNA downstream 389347 39960074 ~ 39960286 (+) True G1737283
TU1989599 lncRNA downstream 408009 39978736 ~ 39986609 (+) True G1737306
XM_036957793.1 mRNA upstream 117402 39420130 ~ 39453254 (+) True zanl
XM_021577695.2 mRNA upstream 238748 39322865 ~ 39331908 (+) True LOC110500364
XM_021577691.2 mRNA upstream 314059 39245831 ~ 39256597 (+) True nat16l
XM_021577692.2 mRNA upstream 314642 39245831 ~ 39256014 (+) False nat16l
XM_021577693.2 mRNA upstream 314642 39245831 ~ 39256014 (+) False nat16l
XM_021577706.2 mRNA downstream 24440 39595167 ~ 39600315 (+) True mpdu1b
XM_021577711.2 mRNA downstream 103245 39673972 ~ 39706202 (+) False acox3
XM_021577712.2 mRNA downstream 103421 39674148 ~ 39706195 (+) True acox3
XM_021577725.2 mRNA downstream 257595 39828322 ~ 39856505 (+) False LOC110500384
XM_036957801.1 mRNA downstream 257595 39828322 ~ 39856505 (+) False LOC110500384
TU1988209 other upstream 280986 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 361171 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 645728 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1488382 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1524150 38045108 ~ 38046506 (+) True G1734961
TU1988631 other downstream 305029 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 491979 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 830777 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 981284 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 1422428 40993155 ~ 40997320 (+) True G1738057