RNA id: TCONS_00004803


Basic Information

Item Value
RNA id TCONS_00004803
length 1481
lncRNA type retained_intron
GC content 0.44
exon number 5
gene id XLOC_002582
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7778870 ~ 7785945 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTCCGTTTTGCCCACTTGACTATCCAGCCCTTCATTTTTCGTCTTGATGAAAACTACAAGAACCATCCTCAGTTTCCCAGTGTCCCCCTCTATGAGGCTTTCTTCTCTCCATGGAGGGTGATCTTTGAAGGGGGCATTGATCCTGTGCTCCGTGGACTGATTGGTCGTCCGGCAAAACTGAACACCCAGGACCACATGTTGGTGAATGCTCTCAGAGAGAGGCTGTTTGCCTTCACATCCCACATAGCTTTGGATCTGGCTTCCCTCAACATGCAAAGAGGGCGTGACCATGCTATACCAGGTTATAATGCATGGCGTCGGTTCTGTGGATTGTCTGCTCCTCAGAATGAGCAAGAATTGGCTGTGGTGATGAACAACACTGAACTAGCCCGCAAGTTAATTGAGCTTTATGGCACCCCTGAGAACATTGATGTTTGGTTAGGAGGTGTTGCTGAGCCTTTTGCTCCTGGTGGTCGTGTCGGTTCTCTTTTTGCCTGCCTGATTTCAAGACAGTTCCAGAAAATCCGAGATGGCGATAGGTTGTGGTTTGAGAGCAATGGAGTGTTCACCACCAAACAGAAAACAGCTCTGGCCTCTGTGTCGCTGGCCCGCATAATCTGCGACAACACCGGAATCCTTAAAGTTCCCAGAGATCCTTTTCGCTTCCGGAGTCCTGCCAATTTTGTTAACTGTGGGAATATCCCAGCTTTTGATCTCGAGCCTTGGAAAGAGACTGGTGAGACATCATACAGTACCTTTTAACTGCTGCATGCTTATACATAAATCTTCTGGGGATGCTTAAACGTAAACCTTCTGCTTGTACATAAATCTCAGCCTAAACTTCCTGATTGCTTTATATGTGCTTGTAGAGTACCTAATTTTGGTGGTAAAGGCACATATAAAGTATTGCATATATCATGGTACGGTGACCATGGTTTAGTTCACCTGTGATTTGGTGTTTGACCTTCCAGGTGATGGTGGCATCAACATTTCAGACATTGGAAATGAGGTTAGATGAGTGTTTATTCTCTCCCAATCCAaaagagaaagtttttttttattatttcactaCAAATCTGGACAAACTAAGAAGCTTCTTTGCTGTACAATGGTTTGGTGCAGTGATATTTATTAATGAATCTGGATGTAACAACTGTCAAGCTGTATTTTATGACTGCACTAAACTATTGCAAGCTGTTAACCTTTTTCCTAGCCTTTCATTGGTTTAAGGGGATTTGCTTCAAATTGAAAACAAatgctttgttgttgtttaatgacAATTCTTAGGCTTGTAATACTAACACATTACATCTTTTTATTGCTACACAGATAGAGATTCCATCCCAGGACCTCCCGGACCCAGGGGACCTCCAGGAGAACGTGGTCCACAGGGTGTAGCAGGGCCACCAGGACCTCCAGGAATTCCAGGACCTCCCATTAATACAACAGGACAACAGTCTGCCTTCTTTGCCTCAGTC

Function

GO:

id name namespace
GO:0006952 defense response biological_process
GO:0006954 inflammatory response biological_process
GO:0006979 response to oxidative stress biological_process
GO:0009617 response to bacterium biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0010310 regulation of hydrogen peroxide metabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9460 Enables peroxidase activity. Acts upstream of or within inflammatory response; regulation of hydrogen peroxide metabolic process; and response to bacterium. Located in cytoplasm. Is expressed in several structures, including hematopoietic cell; hematopoietic system; mesoderm; pleuroperitoneal region; and post-vent region.

Ensembl:

ensembl_id ENSDART00000125179

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004792 lncRNA downstream 143315 7624088 ~ 7636323 (-) True XLOC_002576
TCONS_00005996 lncRNA downstream 525740 7238244 ~ 7253898 (-) True XLOC_002572
TCONS_00005995 lncRNA downstream 718101 7050325 ~ 7061537 (-) True XLOC_002571
TCONS_00004778 lncRNA downstream 948356 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00005994 lncRNA downstream 1084306 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00004805 lncRNA upstream 28642 7810664 ~ 7811388 (-) False XLOC_002583
TCONS_00004806 lncRNA upstream 28642 7810664 ~ 7811754 (-) False XLOC_002583
TCONS_00004808 lncRNA upstream 32622 7814644 ~ 7820475 (-) False XLOC_002583
TCONS_00004807 lncRNA upstream 32622 7814644 ~ 7821542 (-) True XLOC_002583
TCONS_00005747 lncRNA upstream 101731 7883753 ~ 7886040 (-) False XLOC_002586
TCONS_00004800 mRNA downstream 7204 7769814 ~ 7772434 (-) True XLOC_002581
TCONS_00004798 mRNA downstream 22762 7738540 ~ 7756876 (-) False XLOC_002580
TCONS_00004797 mRNA downstream 22767 7738540 ~ 7756871 (-) False XLOC_002580
TCONS_00004799 mRNA downstream 22773 7738659 ~ 7756865 (-) True XLOC_002580
TCONS_00004796 mRNA downstream 44699 7727281 ~ 7734939 (-) True XLOC_002579
TCONS_00004804 mRNA upstream 28433 7810455 ~ 7821686 (-) False XLOC_002583
TCONS_00004809 mRNA upstream 49417 7831439 ~ 7858553 (-) False XLOC_002584
TCONS_00004810 mRNA upstream 52166 7834188 ~ 7857494 (-) True XLOC_002584
TCONS_00004812 mRNA upstream 93054 7875076 ~ 7892192 (-) False XLOC_002585
TCONS_00004814 mRNA upstream 102106 7884128 ~ 7885654 (-) True XLOC_002586
TCONS_00004790 other downstream 267515 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 427528 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004780 other downstream 770148 7009374 ~ 7009490 (-) True XLOC_002570
TCONS_00004776 other downstream 962872 6786333 ~ 6816766 (-) False XLOC_002568
TCONS_00004811 other upstream 88605 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other upstream 99307 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004819 other upstream 147749 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004848 other upstream 893868 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 1234699 9016721 ~ 9016837 (-) True XLOC_002609

Expression Profile

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