RNA id: XM_021577706.2


Basic Information

Item Value
RNA id XM_021577706.2
length 2235
RNA type mRNA
GC content 0.44
exon number 7
gene id mpdu1b
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39595167 ~ 39600315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCGTGAGGGAACGGTTATTATTTGCACACTGTCTACATCACGTCACAGTTCCACAATGGCGAGCCCTGTTATGGAAGAACTTCCAAAGAATTCTGTGTTGGACCCACTGAAGGGGCTCCTGCTCACTTATTTCATGCCAGAATCATGTTACGACGAGTTTTTCCTCAATTTTAACTTTCTGGATGTGCCATGTCTAAAGATTGTGCTGAGCAAAGGTCTGGGCATTGGAATCATCCTGGGGTCTGTGATGGtaAAGCTGCCCCAGATCCTGAAGCTGATGGGGGCTAAGAGTGCAGATGGTCTAAGCTTCAACTCTGTCTTGCTGGAGCTGCTGGCTATTACCGGCACCATGGCCTATAGCATTGCTAACAGCTTCCCCTTCAGTGCCTGGGGTGAGGCCCTCTTCCTCATGTTACAGACAGTAGCCATCGGGTTCCTCATTATGCATTATGGAGGCAACACAGTCaaagGTGTGCTGTTCCTGGTGGTGTACTTTGGTCTGGTAGCTCTGCTGCTCTCCCCTGTAACGCCAATGCCTGTGGTCATGGCCATGCAGGCATCCAACATGCCTGCTATCATCATTGGCAGGCTTATTCAGGTTGTGACTAACTATCGTAATGGACACACAGGTCAGCTGTCTGCCATCACTGTGTTTATGCTGTTCGCTGGCTCCTTGGCTCGCATATTCACCTCAATAcagGAAACGGGTGACTCCCTGATGGCCCTGACCTATGTCATATCCTCTTCCTGTAACGGCCTTATCGCTGCCCAGCTCCTGTACTACTGGAACAGCAGCCCGGcacagaagaagaagacagaGTAGATAGACGGGTGCACATGAAATTAGTTGCCTCTaaattggcaccctatttccaatatagtgcactacttttgaccaggacccataaggctgtggtcaaaagtagtgcactatattgggaatagcgtgccattttggGATGCAGTAGAGAGTATACAGACAGGGTGCAgctcaaatggccccctattccatatgtagtgcactgctgaCCAGGGCCATGGACTCTAATGGTACACTATGTGAAATTGGGTGTCATTTGAGATTTGCACCAATTCACATCTAGAAATGTATACACTCTGCACTCCCCTACTGTAAGCTTAGCTCTGGACCAAACATTCTATTCCCACCACCCAAACCAAGGAACTCTATACTCTATCTGACTTCAATGATACTGTGACTACAGCCCAGTTAGACTAGCTCACAGAGAAATCATTAGTTTTGCCTCAGTGTTTTAGCTCAGGGAAGGGAAGGCTTGACACGCTTATTTCTCCATCCTGAACGCTGATTCTACTAAACGCCACAGAAGTGCCGATatggtgtagggtgaagttgccgcTTGACGCTGATCCTgagtcagtttagcatttttcccacttatggttaaggttaggattctgggaggggaagctgatcctatatctgtacctaggggaaacttcaacCCAGAGCTGTCAAAACACCCACTACGGTCAGTTGTTTTTGTCGTACTCCTACACGGGTTGTCCTCGGACCATAATCTAGAATGAAAACGCATTCCAGAACACAACCAGGAAGGTAACTATTCTAGCTATAATCAAGGGGTCAAGCAATAGAGGTTTACTGTGAaattctctgtctgtgtgtttaagtTAAATGTTCGAATTTTAAGTTGTTGAAGCTTTGTTGACTGAGTGTAATCTAaagcagcctggtctcagatccttTAATGCTTGTGCCAACTTCATTGCTGTACTTGGTAAACAATGTTTGGCGTGACGAGTTACAAGGATTTGGCATTATTGCACAAACAGGCTGGCACACAGGCTAGATCAAAATAACAACTGAACTAAATGGTTCAAATTATCAGTCCACATGATGTTTGTCTGTGTTTCTTTGTGCATATAGATGCTGTATTTGTTTAATGATAAATCACATATTTTATTGAATTCAATGAATGAGTCCACAATACTAAATAATTCATTCCAATTTGATTCAGAGTAACCTGGGAGCAGAAATTTGGGGTCATTATAGTTTTATGTTGAAGTCCAATTTCTCTGTTTAGTTTTAGTTTACTTGTTGAGATTCAACTTCTCATGTTAAGATGCTGCTTGCGCTTGTATGCGTCAAAAGCGAGTGCTACAGTTCTGAACATGGTAAGAGTTTATTtgaatgcaaaaatgtaataaaatctgttttgtttttgttgtgacTGC

Function

GO: NA

KEGG:

id description
K09660 MPDU1; mannose-P-dolichol utilization defect 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988336 lncRNA upstream 143989 39450860 ~ 39451178 (+) True G1736209
TU1988269 lncRNA upstream 232210 39340638 ~ 39362957 (+) False G1736154
TU1988271 lncRNA upstream 248004 39340638 ~ 39347163 (+) True G1736154
TU1988270 lncRNA upstream 251515 39340638 ~ 39343652 (+) False G1736154
TU1988248 lncRNA upstream 292799 39296062 ~ 39302368 (+) True G1736133
TU1988509 lncRNA downstream 104293 39704608 ~ 39705136 (+) True G1736377
TU1988572 lncRNA downstream 176116 39776431 ~ 39842962 (+) True G1736434
TU1988619 lncRNA downstream 258304 39858619 ~ 39858919 (+) True G1736473
TU1989571 lncRNA downstream 359759 39960074 ~ 39960286 (+) True G1737283
TU1989599 lncRNA downstream 378421 39978736 ~ 39986609 (+) True G1737306
trnaw-cca-56 mRNA upstream 24440 39570656 ~ 39570727 (+) True trnaw-cca-56
XM_036957793.1 mRNA upstream 141913 39420130 ~ 39453254 (+) True zanl
XM_021577695.2 mRNA upstream 263259 39322865 ~ 39331908 (+) True LOC110500364
XM_021577691.2 mRNA upstream 338570 39245831 ~ 39256597 (+) True nat16l
XM_021577692.2 mRNA upstream 339153 39245831 ~ 39256014 (+) False nat16l
XM_021577711.2 mRNA downstream 73657 39673972 ~ 39706202 (+) False acox3
XM_021577712.2 mRNA downstream 73833 39674148 ~ 39706195 (+) True acox3
XM_021577725.2 mRNA downstream 228007 39828322 ~ 39856505 (+) False LOC110500384
XM_036957801.1 mRNA downstream 228007 39828322 ~ 39856505 (+) False LOC110500384
XM_036957802.1 mRNA downstream 228007 39828322 ~ 39856505 (+) False LOC110500384
TU1988209 other upstream 305497 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 385682 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 670239 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1512893 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1548661 38045108 ~ 38046506 (+) True G1734961
TU1988631 other downstream 275441 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 462391 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 801189 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 951696 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 1392840 40993155 ~ 40997320 (+) True G1738057

Expression Profile