RNA id: TCONS_00052800



Basic Information


Item Value
RNA id TCONS_00052800
length 451
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_025766
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54270703 ~ 54271345 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTTCAGAGTGAGATCAGGTGGAATAAAAATGCCCTAAGCCCTGCAGCAGGctaaggaagaagaagaaaatcgTGCTGGATGGAGGTTGATAGTTATCGTGCGAGAATAGCGTCGCTAGCCAAGCAGCCATAATAGGAATCCAGCGGCTCAGCCAAGCCATGCATGGGAAATCTGTTTTGTGATGGACTGCCTGGTTTCTCCCAGAGCCCCTTGAGTGTGCCATCTGTGCTCGTGCTGTTGTGGGAGTGTGCGTAGGTGTGCGAGGGCTGGAGAGACGGGCATAAACTAACCCACACCAACAACAGGGCACAGCACTATGTTTTCAACAGATTGACCAACACTTTCACATGGAGAAAGAGTCAGGACAAGGCAGAATTTGAAGACTTGTTTTCAAGTGTTGACGTTGTCAGTAtggcatttgtaaaaaaataaaataaaaatcttataaATC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00050637 lncRNA upstream 44175 54223325 ~ 54226528 (+) True XLOC_025763
TCONS_00052383 lncRNA upstream 158731 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00052799 lncRNA upstream 618302 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052382 lncRNA upstream 621077 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00052381 lncRNA upstream 638356 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052384 lncRNA downstream 12422 54283767 ~ 54284185 (+) True XLOC_025767
TCONS_00052801 lncRNA downstream 18333 54289678 ~ 54303624 (+) True XLOC_025768
TCONS_00052802 lncRNA downstream 61381 54332726 ~ 54336639 (+) False XLOC_025769
TCONS_00052803 lncRNA downstream 61402 54332747 ~ 54336639 (+) True XLOC_025769
TCONS_00052804 lncRNA downstream 563164 54834509 ~ 54836517 (+) True XLOC_025776
TCONS_00050633 mRNA upstream 32243 54012708 ~ 54238460 (+) False XLOC_025763
TCONS_00050634 mRNA upstream 32243 54047342 ~ 54238460 (+) False XLOC_025763
TCONS_00050636 mRNA upstream 33147 54168007 ~ 54237556 (+) False XLOC_025763
TCONS_00050632 mRNA upstream 351240 53773256 ~ 53919463 (+) True XLOC_025762
TCONS_00050631 mRNA upstream 748495 53511936 ~ 53522208 (+) True XLOC_025760
TCONS_00050638 mRNA downstream 282586 54553931 ~ 54567961 (+) True XLOC_025770
TCONS_00050639 mRNA downstream 301380 54572725 ~ 54577985 (+) True XLOC_025771
TCONS_00050640 mRNA downstream 310642 54581987 ~ 54589823 (+) True XLOC_025772
TCONS_00050641 mRNA downstream 472724 54744069 ~ 54752364 (+) False XLOC_025773
TCONS_00050642 mRNA downstream 472745 54744090 ~ 54749171 (+) True XLOC_025773
TCONS_00050635 other upstream 203064 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 1441697 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 1650528 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 4195513 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 5138226 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050662 other downstream 1027698 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 1212168 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 3365029 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 3554594 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 3726645 57997990 ~ 57998559 (+) False XLOC_025817

Expression Profile


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