RNA id: XM_021577711.2


Basic Information

Item Value
RNA id XM_021577711.2
length 2907
RNA type mRNA
GC content 0.49
exon number 18
gene id acox3
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39673972 ~ 39706202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATACAACTATTGAAATAAATGTTTGATAGTCTATAAGAGGTGCAAAGAAAGAAACAGTGAGGCAAGGCGAATTTATGCTAAAAACCCTCTCGACTGACAACACACGGTCGCAAACCCGTCGCACTGCATCGCGTCATTTATGACCTATCTTAAGCGGTGCAGGGTAAGGTGCAGCTACACCAAGGCTAAGTACGACCGGAGTGACAAGATGGAGATGGGTCTGCCTGACTTCCCTAGTGGACCTCTGGACATATACAGGAAGAAAGCATCCTTCAACTGGAAAGAGATGGTCATGTTCCTTGAGGGAGAGGACATGCTAGCATTTAAGCAACACGTGTTCCGGATGTTGGAGAATGACCCTATCTTCGCCCGGCAGTCCGGCGAGGACATGTCAACGGAGAGGATGCGTGAGGTCACTTTCAGACGGTGTAAACAGCTGTTCCGGTATGACTTCTTGACACGCGATGACATCATGGCGAACCCGTGGAGGACGGTAGTGCTCAATGACTGTCTGGGCATGTACGATTGGTCATTGGGCGCCAAGTACTTCCTCAACAAAGGGATGTTTGGTGCGACTGTGGCCAACTCCGGATCCCAGAGACACAGCCAGTTTGTGCAGGATACAGAAGACATGATGACGTTTGGATGCTTTGCATTGACAGAGCTGAGCCATGGCAGCAATACCAGAGCTATGAGGACCACAGCCAAGTATGATCCCAGCACACAGGAGTTTGTGATCCATTCCCCTGATTTTGAGGCGGCCAAGTTCTGGGTGGGGAACCTGGGGAAGACGGCTACACACGCTGTGGTGTTCGCCCAGCTCTACACCCCCGACGGAGCCTGTCACGGCCTGCACTCCTTCATAGTTCAGGTCAGGGATCCCAAGACTCTGCTGGCGATGCCAGGAGTAATTGTTGGAGATATGGGCAAGAAGCTCGGCCAGAACGGACTGGACAATGGGTTTGCGGTGTTTCACAATGTCCGAATCCCTCGGGAGAATATGCTGAATAAGACCGGTGATGTCACCCCTGAAGGACACTACGTCACACCTTTTAAGGACCCTAACAAGCGTTTCGGGGCTTCCCTGGGTGCCCTGTCGGGGGGCAGAGTCTCCATCTCCAGAATGGCTGTGGTCAACCTGAAGCTAGCCATGACTGTAGCTATCCGTTTTTCTGCCACCCGACACCAGTTTGGACCTAAAGACGACCAGGAGATTCCTGTCATAGAGTACCAGCTCCAGCAATGGCGTCTGATCCCTTACCTGGCGGCCGTGTACGCTCTGGACTACTTCTCTAAATCCATCTTCGGGAACTTTGTGGAGTTCCAGATCGGTATGATGATGAAGGACAATAGCGACAGACAGGCGGAGCTGGGCAGAGAGATCCATGCCATCTCCTGCTCCAGTAAGCCCCTGGGGTCCTGGACGGCTCAGAGGGGTATCCAAGAGTGCCGTGAGGCCTGCGGAGGACATGGATACCTGGCCATGAATCGTCTGGGGAGCATCAGGGATGACAACGACCCTAACTGTACATATGAGGGAGACAACAACGTGCTCCTGCAGCAGACCAGCAACTACCTCCTCAGCCAACTACACGCCAAACAACAAGATGGAGTGAGGATTGAGTCTCCACTAGAGTCTGTCAACTTCCTGGAAGACTTTGACAGCATTCTGGGGACCAGGTTCACGGCAACGTCGGTGGAGGAGTGCATGGACTCTGCagTGCCATTGGCAGCGTATAAATGGCTGGTGTGTTTCctactgagagagagcgagaggagagtggCTAAGGAAAAGGCTTCTGGCAAGGCTGACTTTGAGGCCCGCAACAACAGCCAGGTGTTCTACTGCCGTTCCTTGTCCATCGTGTACATAGAGCACACCGTGGTGCAGAGGTTCCACGACCAGACCCATGATGAGGACACACCGGCTGGTCTCAGACCAGTTCTTAAACAGCTCTGTGCCCTCTACAGCCTGTGGACCCTCAGCAACCACATGGCCACGCTGTACCAGGGGGGTTATTTCTCTGGTTGGGAGCCAGCTGATTGGATCCAGCAGGCCATCCTCACCCTCTGCTCTCAGCTGAAGGACGAGGCCATAGCTTTGGTGGACGCCGTTGCCCCTCCTGACTTCATCCTCAACTCACCCATTGGCAATGCGGACGGGGAGCTCTATAAGAACCTGTGGTCCACGGTGATGCAGGGGAACAAGGTTCTAGAGCGCCCGTCCTGGTGGGCAGAGTTCACCTCAGACAAGCCTGTGGTGGGTTCCCTCCGACCCAAACTGTAGGTTTGTAGATCACGGTTCTAGAGTCCTCTGTTCCCCAGTTACACCAACcagtttcatcagcccagaagaAAACAAGAAGAAGCCTTCAGATTAGATGAATCTCATTCTCCTCACTTTGAAATATGAACTTTGTATTATCAGATATGAAATGAATGACATATTGGGCCTTTTTAAGAGTGTAGAGGCAATGCAATTATAAACCACTGTCTTCCTCTGAATACGGTAAAGAATGATAATCAACTACGTTTGTGGTAATTGTTGGAATCAGTGCCTATGACGGGAAGCACTCTAAAGAGAAGAGATTATGTTCAAGTACATTTGTTAACACGTTTCAATAGATTTGATGCCAGCTTCTTGATATGATTATGTATCTAACACTACATAAGGTTGTCTGTTTTGTATAATTAATGTAACTGTATAATTAATGTAACTTTAAATTCATGTAATGTGATATTTGTGAACTAGAGCTTATTTTGATTGCCAAATGATGCAATGAGTCCACGTATATACTTATAATTAtgtggtaatatatacatgtaattgTGCACATTTTGTAAAATAATGACTGAATAAAGggtttgtaaaataaataaaatatttctaCTAATACATATACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988336 lncRNA upstream 222794 39450860 ~ 39451178 (+) True G1736209
TU1988269 lncRNA upstream 311015 39340638 ~ 39362957 (+) False G1736154
TU1988271 lncRNA upstream 326809 39340638 ~ 39347163 (+) True G1736154
TU1988270 lncRNA upstream 330320 39340638 ~ 39343652 (+) False G1736154
TU1988248 lncRNA upstream 371604 39296062 ~ 39302368 (+) True G1736133
TU1988572 lncRNA downstream 70229 39776431 ~ 39842962 (+) True G1736434
TU1988619 lncRNA downstream 152417 39858619 ~ 39858919 (+) True G1736473
TU1989571 lncRNA downstream 253872 39960074 ~ 39960286 (+) True G1737283
TU1989599 lncRNA downstream 272534 39978736 ~ 39986609 (+) True G1737306
TU1989605 lncRNA downstream 293213 39999415 ~ 39999762 (+) True G1737310
XM_021577706.2 mRNA upstream 73657 39595167 ~ 39600315 (+) True mpdu1b
trnaw-cca-56 mRNA upstream 103245 39570656 ~ 39570727 (+) True trnaw-cca-56
XM_036957793.1 mRNA upstream 220718 39420130 ~ 39453254 (+) True zanl
XM_021577695.2 mRNA upstream 342064 39322865 ~ 39331908 (+) True LOC110500364
XM_021577691.2 mRNA upstream 417375 39245831 ~ 39256597 (+) True nat16l
XM_021577725.2 mRNA downstream 122120 39828322 ~ 39856505 (+) False LOC110500384
XM_036957801.1 mRNA downstream 122120 39828322 ~ 39856505 (+) False LOC110500384
XM_036957802.1 mRNA downstream 122120 39828322 ~ 39856505 (+) False LOC110500384
XM_036957803.1 mRNA downstream 122120 39828322 ~ 39856505 (+) False LOC110500384
XM_036957804.1 mRNA downstream 122120 39828322 ~ 39856505 (+) False LOC110500384
TU1988209 other upstream 384302 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 464487 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 749044 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1591698 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1627466 38045108 ~ 38046506 (+) True G1734961
TU1988631 other downstream 169554 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 356504 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 695302 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 845809 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 1286953 40993155 ~ 40997320 (+) True G1738057

Expression Profile