RNA id: XM_021577725.2


Basic Information

Item Value
RNA id XM_021577725.2
length 4838
RNA type mRNA
GC content 0.53
exon number 31
gene id LOC110500384
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39828322 ~ 39856505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTGCAACGAACACTGCAAATTggtgtaacgttagctaggtggacATTGTATTTAGCTAACTAACCCTACCTGTAGATATTTTTCTAGTGTTATATCAACAAGTTCGTTGGGAAATCAGTTGATTTTTTTCAACGAACATAACTTTGTCTATTTGCAAcTCTTCAGCAGCCCCCTCCTGAGCAAGATGAGTGCAGACGGGGGCGGCAAGCCTGCCAAGGTGGGCTCGGTGGTGGAGGTGATCGGTAAGGGTCAGCGTGGCACGGTGGCTTACGTGGGCGCCACGCTCTTCGCCACTGGTAAGTGGGTGGGCGTGATCCTGGACGAGCCCAAGGGCAAGAACGACGGCACGGTCCAGGGGAAGAGATACTTTCAGTGTGATGAGAACTGTGGTATCTTTGTGCGCCAGTCCCAGATCCAGCTAGTGGAAGATGGATCCAGTGCCACCTCCCCAGACACCCCAGAGGCGGCCACTGCCAAGTTCCTGCCCAAGCAGAAAGacATTCCTGAGACTCCGAAATCAGTCAAACAGATGCCCATTCCCAAGAAGTTCGTAACCCGCCGTAGTACCAAGACCCCCCGAGTCTTAGCCACCCCGGCCTCTGGTCTGTCCAGCTCTCTTTCCAGGGAGGATGTCAGTGAGGGCAGCCTGTCTTCCAAGGGTGCACTGGGGGCTCCCGTTGTCCCCCTGCCCAGCGGCACCCCCACCACGCCCGGTGCTCCTCCCCCTGCCACCCCTAGCAAGGCTGAGCCTCCCGTAGCGAAGCAGGAGGAGGAGTCTCTGCGAGGTCAGGTGAAGGATCTAGAGGAGAAGCTGGAGACCCTGAAGATGAAGCGGGCAGAGGACAAGGTCAAGctgaaggagctggagaagtACAAGATCCAGCTGGAGCAGCTGCAGGAATGGAAGAGCAAGATGCAGGAGCAGCAGGCCGACCTGCAGAAACAACTCAAGGAGGCCAAGAAGGATGCTCGGGAGGCCCTGGAGTCTAAGGACCGCTACATGGAGGAGATGTCAGACACGGCGGACGCCATCGAGATGGCCACACTGGACAAGGAGATGGCCGAGGAGCGGTCGGAGAGCTTGCAGGTGGAGGTGGAGTCACTgaaggagaaggtggaggagctCACCATGGACCTGGAGATCATCAAACACGAGGTCGAGGAGAAAGGTTCTGATGGAGCTGCCTCCAGTTACCATGTCAAGCAGCTGGAGGAGCAGAACAGCAGACTGAAAGAGGCTCTGGTCAGGATGCGTGACCTGTCTTCCTCTGAGAAGCAGGAGCATGTGAAGCTCCAGAAGCAGATGGAGAAGAAGAATGGAGAGCTGGAGACTCTGAGGACCCAGAAGGAGAAGCTACAGGAGGAGATGAAGCAGGCTGAGGCCACCATTgatgagctgaaggagcagGTTGATGCTGCTCTCGGGGCAGAGGAGATGGTGGAGACTCTGACTGAGAGGAATCTGGACCTGGAGGAGAAAGTACGAGAGCTCAGAGAGACTGTCACAGACCTGGAAGCGATAAACGAGATGAATGACGAGCTGCAGGAGAACAGCAGGGAGACGGAGATGGAGCTGAGGGAGCAGCTGGACCTGAACGGGGCTAGGGTGAGAGAGGCCCAGAAGAGGGTGGAGGCCGCTCAGGAGACGGTGGCTGACTATCAGCAGACCATCAACAAGTATCGCGAGCTCACCACCAGCCTACAGGATACCAACAGGGAGCTGACCATTGCTCAGAATGCCAATGCAGAGCAGGTCCAACAGCCTCCTGCTGAGCTGTTTGACTTCAAGATCAAGTTTGCTGAGACCAAAGCCTACGCCAAGGCCATCGAGATGGAGCTGAGAAAGATGGAGGTGGGCCAGGCCAACAGACAGgtgtctctcctcacctccttcatGCCCGACTCCTTCCTGCGTCATGGAGGAGACCACGACTGTATTCTGGTGCTCTTGCTCATACCAAGACTAATTTGCAAgGCTGAGTTGATCAGCAAGCAGGCCCAAGAGAAGTTTGATCTGAATGGTAACCCAGTGGAGAGGACTGGGATGAAGATGAGAGGACCACCTGGAGAACAACTCAGCTTTGCCTCTGGACTGGTGTATTCTCTAACCCTGCTACAGGCCACGCTGCACAAATATGAACAATCTCTGAACTGCTGCAGTGTGGAGGTGTATAAGCGGATGGGGACTCTCTACTCAGAGATGAGTGTCCATGAGCGTTCCCTAGACTTCTTTATAGACCTGCTGCACAAAGACCAGCTGGATGAGACTGTACACGTGGAGCCTCTCACCAAGGCCATCAAGTACTACCAGCAACTGTACAGCATCCACCTGGCTGATCAGACTGAAGATTGCACTGTGCAACTGGCTGATCACATCAAGTTCATCCAGAGTGCATTGGACTGTATGGGTGCAGAGGTGGTGCGTCTCAGGGCCTTCCTGCAGCCGGGGCAAGAGGGGGCTGACCTGAACATCCTGCTGAAGGACCTAGACACATCCTGCAGCGACATCAAACAGTTCTGCAAGAAGATCAGACGCAGGATGCCAGGGACCGACGTGCCAGGGGTGCCCGCCGCTCTGGCCTTTGGCGCACCGGTGTCGGAGACTCTAACGGACTGCAGGCGTCAGCTGACTCGGGTGGTTGCCGTGCTACAGGAGGTAGCTGCGGCGGGGGCGCAGATGGTCGCCCCTCTAGGAGAACAGGAGGGGCTCAACACCCTCAAACTGGAGGACGTGGCCTTCAAGGCTGTTGAACAGgtgtATGGGTCCCATGGCCTGAATCCCCATGAGTGTCTGCGTCAGTCCTGCAGCTCTGTCATCTCCACCATGAACAAGATGGCTACCGCCATGCAGGAGGGAGAGTATGACGCCGAGCGACCACAGGGAAAGACACCCCCGGTAGAGGCTCGTGCAGTGGCCCTCAGGGCAGAGATCACTGACGCAGAGGGTCTGGGAGTCAAACTGGAGGACAGAGACACTGTCATCAAGGAGCTCAAGAAGTCCCTGAAGATCAAAGGAGAGGAGTTGAGTGAGGCCCACGTCCGTCTCAGCCTGCTAGAGAAGAAGCTGGATACGTCCACTAAAGATGCAGACGAACGTGTGGAGAAGATCCAGACCAAACTGGATGAGACCCTCGCCCTGCTCAAGAAGAAAGAGAAGGAGTTTGAGGAAACCATGGACGCCCTGCAGGCAGACATCGACCAGCTGGAGGCAGAGAAAGCAGAGCTGAAGCAGCGTCTCTCCAACCAGTCAAAGGTGACCATTGAGGGCCTCAGGGCCCCGCCTGCCTCTGGCATCGCATCCATCGTCTCAGGAACCGCCGGAGcgggTGTTGCCCCAGCAGCAGGGGGCCTGTCTGGGCCGATGCAGGTGGTGGACTCCCCTCTCCTCCGTCAGCAGGTGGAGACCCAGAGACTGGGCATCAAACACCTGAAGAATGAGAACAACAGACTGAAGGCAGAGAAGATGAGAGCCCAGttagcctccctccctcccctccacgtCCCCAAGCTTCCTTTGAGAGAggcctccacctctccccctgctGAGGGGCCTCTCCACGGGGCTCTCTACAGGAAGACAGACCAGCTCCTGGGGACCCTGCTCAAGATGAGTGCCGCCGTTAAGGTGGTCGACATCACCGGGAAGACTCCAGTGAGTGCGAGTGCTCAGCTCCTGGACCAGACAGCTCGACTGCAGTCTCTGAGTGACGCTCTGGACAAACTGAAGGGTGAAGTGTCAGAGCATGTGGTTTCTCAGCAGCCTGGGGCGAAGGTCTCCTCTGACTTTGCCACCTTCCCCATTTCCTCCTTCGTCAAGGCCAAGGAGGAGAAGCAGGGGGGTACGGTGTTCATAGGGCGCGTGGCCATCCCATGTGCCAAGGGCCAGGAGCAGGTGCACCGTCTTGTCCTATCACAGCAGCACCTGCAGCAAGTGCACCGCCTCCTCATGACCTAAGATGCCATCCCATTGGCCTGCGTCCACAAGTGATAGCAAGCTCCTCCAATCAGATGCAAAAAATGTTTTCAGTTCCAGTCCATTTCCTATTGTTCATCAGATTCTCTCAGGACACGGTTACACTACACCACCTGGTCAAAAGGTATTACCGATCTATGCCAAAGAGACACACAAGTGTTCTCGTCTAGTTATAATACAGAGTAATTGTTATTCTTTACCAACACGTTCTACATGATTGTCAGAAGTCTTTTTAAAACGACTTGACTCGTAAATGTTGCATCTCTAGAATTGATTTAAAAGTATGGAGAAACAAACAAAATGTATGCACACCAAGCGAGATGGAGCAGAAATTGGTTAATGGCATATGGCACAATTATTCATGCATTGCACTTTTTTTTTGTACTGTGGTGATTATTTAAATCTACACCTGTGTAAACCAGCAGTCGGGACCAAGCAAATTCACCACTGAAATAAATGCCATTTAGCCACGTTAATGTGTGATTCCCGTTTGAGATAGACTAATGTATTCTAAATCAGGGTGTCCAGGCACTCTGACAATGAAGTTCCAATTCAGACACCTTTAACTTATGTTGAGATGGGACGCTAATTTGACATGCCTACAGCAACCAGGTTTCACAAAGTGTTAGTCATTCAACTATGGTCTATCATATGTACCGGTGTCATTATGGTAGATGAATGCAAGTATGTCTGGGTGGAAAAGACATGAATTGTAAATGCTGAATAGTTAACTTTCAGCACTAGCCACATCCTAATCTCAAAAGCCATTATACTGTATAACGTGTTCATTGTGGACTGAGTGATTATCCATCTGTCCTGTATCCAAAAACAGACCAATAAAGTTCTTACCTAACAAAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1988509 lncRNA upstream 123186 39704608 ~ 39705136 (+) True G1736377
TU1988336 lncRNA upstream 377144 39450860 ~ 39451178 (+) True G1736209
TU1988269 lncRNA upstream 465365 39340638 ~ 39362957 (+) False G1736154
TU1988271 lncRNA upstream 481159 39340638 ~ 39347163 (+) True G1736154
TU1988270 lncRNA upstream 484670 39340638 ~ 39343652 (+) False G1736154
TU1988619 lncRNA downstream 2114 39858619 ~ 39858919 (+) True G1736473
TU1989571 lncRNA downstream 103569 39960074 ~ 39960286 (+) True G1737283
TU1989599 lncRNA downstream 122231 39978736 ~ 39986609 (+) True G1737306
TU1989605 lncRNA downstream 142910 39999415 ~ 39999762 (+) True G1737310
TU1989640 lncRNA downstream 194944 40051449 ~ 40051766 (+) True G1737344
XM_021577711.2 mRNA upstream 122120 39673972 ~ 39706202 (+) False acox3
XM_021577712.2 mRNA upstream 122127 39674148 ~ 39706195 (+) True acox3
XM_021577706.2 mRNA upstream 228007 39595167 ~ 39600315 (+) True mpdu1b
trnaw-cca-56 mRNA upstream 257595 39570656 ~ 39570727 (+) True trnaw-cca-56
XM_036957793.1 mRNA upstream 375068 39420130 ~ 39453254 (+) True zanl
LOC110500831 mRNA downstream 88758 39945263 ~ 39952801 (+) True LOC110500831
XM_021577738.2 mRNA downstream 96774 39953279 ~ 39959230 (+) False LOC110500392
XM_021577739.2 mRNA downstream 96866 39953371 ~ 39959230 (+) True LOC110500392
XR_005038599.1 mRNA downstream 115814 39972319 ~ 39995553 (+) False LOC110500393
XM_036957810.1 mRNA downstream 115815 39972320 ~ 39997941 (+) True LOC110500393
TU1988209 other upstream 538652 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 618837 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 903394 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1746048 38077551 ~ 38082274 (+) True LOC110500301
TU1986954 other upstream 1781816 38045108 ~ 38046506 (+) True G1734961
TU1988631 other downstream 19251 39875756 ~ 39876950 (+) True G1736484
TU1989649 other downstream 206201 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 544999 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 695506 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 1136650 40993155 ~ 40997320 (+) True G1738057

Expression Profile