Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00052801 |
| length | 1365 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 2 |
| gene id | XLOC_025768 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 54289678 ~ 54303624 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002088 | lens development in camera-type eye | biological_process |
| GO:0098700 | neurotransmitter loading into synaptic vesicle | biological_process |
| GO:0050803 | regulation of synapse structure or activity | biological_process |
| GO:0060076 | excitatory synapse | cellular_component |
| GO:0098563 | intrinsic component of synaptic vesicle membrane | cellular_component |
| GO:0044456 | obsolete synapse part | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0099503 | secretory vesicle | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0030285 | integral component of synaptic vesicle membrane | cellular_component |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0098793 | presynapse | cellular_component |
| GO:0015172 | acidic amino acid transmembrane transporter activity | molecular_function |
| GO:0005313 | L-glutamate transmembrane transporter activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052384 | lncRNA | upstream | 5493 | 54283767 ~ 54284185 (+) | True | XLOC_025767 |
| TCONS_00052800 | lncRNA | upstream | 18333 | 54270703 ~ 54271345 (+) | True | XLOC_025766 |
| TCONS_00050637 | lncRNA | upstream | 63150 | 54223325 ~ 54226528 (+) | True | XLOC_025763 |
| TCONS_00052383 | lncRNA | upstream | 177706 | 54111389 ~ 54111972 (+) | True | XLOC_025765 |
| TCONS_00052382 | lncRNA | upstream | 640052 | 53632118 ~ 53649626 (+) | True | XLOC_025761 |
| TCONS_00052802 | lncRNA | downstream | 29102 | 54332726 ~ 54336639 (+) | False | XLOC_025769 |
| TCONS_00052803 | lncRNA | downstream | 29123 | 54332747 ~ 54336639 (+) | True | XLOC_025769 |
| TCONS_00052804 | lncRNA | downstream | 530885 | 54834509 ~ 54836517 (+) | True | XLOC_025776 |
| TCONS_00050655 | lncRNA | downstream | 810473 | 55114097 ~ 55114757 (+) | False | XLOC_025783 |
| TCONS_00050657 | lncRNA | downstream | 819038 | 55122662 ~ 55123322 (+) | False | XLOC_025784 |
| TCONS_00050633 | mRNA | upstream | 51218 | 54012708 ~ 54238460 (+) | False | XLOC_025763 |
| TCONS_00050634 | mRNA | upstream | 51218 | 54047342 ~ 54238460 (+) | False | XLOC_025763 |
| TCONS_00050636 | mRNA | upstream | 52122 | 54168007 ~ 54237556 (+) | False | XLOC_025763 |
| TCONS_00050632 | mRNA | upstream | 370215 | 53773256 ~ 53919463 (+) | True | XLOC_025762 |
| TCONS_00050631 | mRNA | upstream | 767470 | 53511936 ~ 53522208 (+) | True | XLOC_025760 |
| TCONS_00050638 | mRNA | downstream | 250307 | 54553931 ~ 54567961 (+) | True | XLOC_025770 |
| TCONS_00050639 | mRNA | downstream | 269101 | 54572725 ~ 54577985 (+) | True | XLOC_025771 |
| TCONS_00050640 | mRNA | downstream | 278363 | 54581987 ~ 54589823 (+) | True | XLOC_025772 |
| TCONS_00050641 | mRNA | downstream | 440445 | 54744069 ~ 54752364 (+) | False | XLOC_025773 |
| TCONS_00050642 | mRNA | downstream | 440466 | 54744090 ~ 54749171 (+) | True | XLOC_025773 |
| TCONS_00050635 | other | upstream | 222039 | 54067523 ~ 54067639 (+) | True | XLOC_025764 |
| TCONS_00050620 | other | upstream | 1460672 | 52828912 ~ 52829006 (+) | True | XLOC_025751 |
| TCONS_00050613 | other | upstream | 1669503 | 52620058 ~ 52620175 (+) | True | XLOC_025746 |
| TCONS_00050578 | other | upstream | 4214488 | 50069595 ~ 50075190 (+) | False | XLOC_025717 |
| TCONS_00050573 | other | upstream | 5157201 | 49132341 ~ 49132477 (+) | True | XLOC_025709 |
| TCONS_00050662 | other | downstream | 995419 | 55299043 ~ 55299158 (+) | True | XLOC_025787 |
| TCONS_00050664 | other | downstream | 1179889 | 55483513 ~ 55483647 (+) | True | XLOC_025789 |
| TCONS_00050682 | other | downstream | 3332750 | 57636374 ~ 57639448 (+) | False | XLOC_025808 |
| TCONS_00050688 | other | downstream | 3522315 | 57825939 ~ 57829919 (+) | True | XLOC_025812 |
| TCONS_00050692 | other | downstream | 3694366 | 57997990 ~ 57998559 (+) | False | XLOC_025817 |
