RNA id: TCONS_00052802


Basic Information

Item Value
RNA id TCONS_00052802
length 3914
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id XLOC_025769
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54332726 ~ 54336639 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAGAGGACAGGGAACGGGGCAGCAAACGAAAGAAGAGAAGGAGCAGGGGCTGGTAAGTACAATCAGTCACAGATGAGAGTCATTTGTCTCAGTCTGAGAGGCACTCATTCAATTATTCCCTAACTGTTTACTCTGGTGGGAACAGAGACATGCGGGCAGGagtattgattcatttatttttacaccACATCATTAAACACCAATGCGCGGGCGAAATAAGATTGAATTTGGGCTTCTCACTTCCAATGTAGCAATGGCCGAATTTAAGGTAGTGCTTATCCGCCGGTCACAGACTACCTCGCTCTCGTTCGGCTCGTGTCTGCGCCCGCTGTGAGGGATAGCAGTAAATCGTTAGTTGTGAGACTGCCATAAATTGCTGACTCACGTAAAGAGATGGTGCCCAATTACACAGCAGGACTACCTGGCACTCCACTTCTAATTGAACTGCTATTTGAGCTTTTCAAAGTAATTTGTTATTTCaaagattccttttttttttttttttgctcgcctgcctgcctgccttttaaaaaaaaaaaaagcatacaaagcAAGCCTGAGCCGAGAAGCGAGAAAGGAGCTTATACCGACAAGTAGATTTTACAGCCCAAATTAAGTTCTTGCTCATGTTGGCAGCGGCTCAGGCGCACAGTAATATTTGCTTCCTGTTTGTGCCCTTGCAGAAGTTTTCCATCACATGGTCTGCAAGGCTTAGAGGTCCCCGATTGCATGTGAAGTGCAACCAGCGAGCCATGCGCTGCTAAGTATAATTACTCAGACCGGCTACGGCACAAGACAACAAACCCATTTTGCGAGAAAATGGAGATTCTAAATGGAGGACCAAGATGGACATCCAAATGGAGGGTAATAGAGCAGATGGGCTATGATGGGATTTGGAGTGTagcaacgacaacaacaacaacaacaggaggTAGAACAACAGGTTTGTAAAGCAAGTGTAAGGGAGCGATGCAATGCAAGAGTGGGTTTTTCTCAGCAACTTAACtagttaaattatattaaatgttgATGTTCACTGCTATTATTTGAATGACTATGAGGGTTTCCTGAAAGTGCAAATATTTAAAGATTAACatttgcactgaaaaaaattatagatttttgctgcttgttcaaattatgtatttaatataagctaaaacaacacaatttttgggaTTTCTTTGGGGACATCAAGTGTGTGAGGGAGCCGTAGGTGAAGACATGGAGGCGGAATGAATCCAAAAGCTGGaggtttatttaaacaaacagctATCATCAAACAAAGGCAGAATGTAGATCATAAACCAGGCAACGACAAGCAAACAAAGAGGCAGTCCGAAAAAGCAAACAAGGCAGAGTCCAAAATCCAAAAAAACAGTAGTCAAAAGGGCAGGCAAAAAGGTCATAACACAATGGCAGAAACAGTAGTAGGAAAACGCTTAGTAGGCAGTGAAACTGGCAATACTTCTTAAAGAACAGACATAAGCTGTGTGCTTATATTTGGTGGCTACCAGGAAGTACCACCGAGGATGTACCCAGTCAATATTCGGGAGAGAGCTCCCTCTGATGGGCGGATGAATGGTAAGCTGCCATATTTGTTACAAAGTGTTTTAGGTTCAATCTTattaaatttgtcaaaataattaagtaaataataacacattcattcattaatttttatgcGGCTTAACCCTGTAATGTAAAGGGGACGCTGACAAGGGAGGTGTGGATCCAAATGTAAGTTTATTATGCAGAGAATGGTCAGGGGCAAGCAGATTTAAATAGGCAATCCAGACTTGTGGTCATAAAAATGGTGGGTGGTCAAAAAACAGACAGCGAGCAACATAAAGAAACAtggcaagacaaggaaaacgcatcaaacaagactcagcactgatacACTTGTGTGCGGTTTAAATAGGTGTACCAGAAAGACCAGGGAGATTATTATGATACTAAATTACTTATATTGATGAGTATTATGTGACAAAGCATAGGATCTGGAGCATAGGATAGATTCTTTGGCGAAGACCCCAACCGTAGCTTGGTTTGGGAGCTTTTAGATCCAATTACGTCTGCTGAGGACGAAGGCAGGCGCGGAGCCTTCCCACCTGGACAgggccaacctggtggtggtggtgggaaGGACGGTGGGTGAACGTCTGCGTCGGTGCCTGcaatcaaatgaatgaaatgaatagaCAGCTTATATTCCTTGTGTCTCTTGGCTATTGGTTGGAACTGATTATGATCAGTGACATGGCATTAGGTATTCCTTGTGTCTTGTGGCTATTGGTTGGAACTGATTGTGATGAGTAATGTGGCATTAGGTATTCCTAGTAGAACTACCGCTACAAGCTACATTCCTTGTTATCAGTCTTTGAGTGGCTCCCAACTGTGTGAGTGTTATCAGTTGTGATCCgaaacagatgtgtgtgtgtggtgcatgactggatctatAGTCCATCTAACAGCAGATTTGTAGCTCTTTAGCAAGCTGTGATTTTACCAGCAATCCACAAGAATAGGATCGCTGGTGATTGGGAcaagttccttatttatcaggaattgttacagcggaatgaactgccaactatggGAGGGCTGGGTAAAATGTAACACAAAATTTTATGGTATTtactcagggttaaccatggcatgcttccaaGGTTTTCACCGAGGTGTCGTCAGACGTCTTCCTGCCAGTTATGGAAAAAGTTCAGAAAAATTTGTTGAGAAacagtcaatatttttttataaaaaataaaaaaaaacggtgAAAGTAAGAACGTAAAATCTTACTTTGTTGCGATTACtatcttctaggctaaaagatggaaccattttgaaagatgtaagaaACACTCTGCCTGCCTGCTAGTTTTGTGGAAAACACGACACAttggggttagttgtaacagagtgttacaaataagccacacactgttggccACCAATTAAACTAACAGAATAATTGTTAAATTTTGAGTTTAATGTtgagaatttaaatagttttttatagaaaatatagtttttatataaaaatattttattgctagTAATGCAAGTAAATACAttgtataatatgtataataacgCATATTAATATAAATGCGTTTATCCAATAGATAGATGAACATGGCCAATTTAGTggatgtcttaggactgtgggggaaaccggagcacccggaggaaacccacgccaacacggagaacatgcaaactccacacagaaatgccaactggctcagctgggattcgaaccagaaaccttcttgctgtaaggcaacagtgctaaccactgagcaaccatgctgcctgtgttgggacaacattaatgaattgtgtggaattgTAACAGTGTgtattaatgaaatatttttaaacattttgatgCCAGGACCTCCAAATACATTGTCACAATAAAATGTACTAAACCTTTTCGGGCTGTAAAAGCTTGTCAGTGGATCTGTAGTCGTGGGTTGTTTAACATTTGGTATGTTTGAACTGATTAAAATGAACTTTTGTGTGATTGCTCTGTTTTTGCAGTGAATTTAAATATGTGAAACCTTGATGCACACCAATCAAGTGAACTGAGACTGCTGAAAAGAGGAGTCTTGAACTCTGGTGTGGTTcaactgaaacacaaacacattttttaaggtCTTACAAGGCCATAAACAGGACAGAATGTTCACGTATAGTGTGATTCTGGAATACCAGGTACATTTTGCCTCTCCAAGATTAATCTATAGTAgtttttaaaagagcaaaaaCTTTAGCCATTAAGTTTTAAATAATAGCATCAAGTTAGTTCTAACAATAATGGTTGGGTGTATATTTAGGGACTTTTTTGcttaaaaatattaacttaaaaacTTCCACTACACCCTTTTGTCACTGTCTCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052801 lncRNA upstream 29102 54289678 ~ 54303624 (+) True XLOC_025768
TCONS_00052384 lncRNA upstream 48541 54283767 ~ 54284185 (+) True XLOC_025767
TCONS_00052800 lncRNA upstream 61381 54270703 ~ 54271345 (+) True XLOC_025766
TCONS_00050637 lncRNA upstream 106198 54223325 ~ 54226528 (+) True XLOC_025763
TCONS_00052383 lncRNA upstream 220754 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00052804 lncRNA downstream 497870 54834509 ~ 54836517 (+) True XLOC_025776
TCONS_00050655 lncRNA downstream 777458 55114097 ~ 55114757 (+) False XLOC_025783
TCONS_00050657 lncRNA downstream 786023 55122662 ~ 55123322 (+) False XLOC_025784
TCONS_00052805 lncRNA downstream 1049576 55386215 ~ 55387657 (+) True XLOC_025788
TCONS_00052806 lncRNA downstream 1145481 55482120 ~ 55488241 (+) False XLOC_025789
TCONS_00050633 mRNA upstream 94266 54012708 ~ 54238460 (+) False XLOC_025763
TCONS_00050634 mRNA upstream 94266 54047342 ~ 54238460 (+) False XLOC_025763
TCONS_00050636 mRNA upstream 95170 54168007 ~ 54237556 (+) False XLOC_025763
TCONS_00050632 mRNA upstream 413263 53773256 ~ 53919463 (+) True XLOC_025762
TCONS_00050631 mRNA upstream 810518 53511936 ~ 53522208 (+) True XLOC_025760
TCONS_00050638 mRNA downstream 217292 54553931 ~ 54567961 (+) True XLOC_025770
TCONS_00050639 mRNA downstream 236086 54572725 ~ 54577985 (+) True XLOC_025771
TCONS_00050640 mRNA downstream 245348 54581987 ~ 54589823 (+) True XLOC_025772
TCONS_00050641 mRNA downstream 407430 54744069 ~ 54752364 (+) False XLOC_025773
TCONS_00050642 mRNA downstream 407451 54744090 ~ 54749171 (+) True XLOC_025773
TCONS_00050635 other upstream 265087 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 1503720 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 1712551 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 4257536 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 5200249 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050662 other downstream 962404 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 1146874 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 3299735 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 3489300 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 3661351 57997990 ~ 57998559 (+) False XLOC_025817

Expression Profile

//