RNA id: NM_001160551.1


Basic Information

Item Value
RNA id NM_001160551.1
length 1460
RNA type mRNA
GC content 0.41
exon number 7
gene id tmm85
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40053881 ~ 40060698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATACTGAAACGTCACCATTGTGTGCCCGGCCATCGTATGTCGTCGATTTAAGCTGAATTAACTACTTGTGAATAATTTGACGAATATTCACGTACGGTTGGCTAATTCTGCTCGAGAGTAACATAAAAGTAAAGTAAAGACTAGTTGGAACGTCTCTAAGATATGAAAGATACACTCCTTGTGTTTCCAAAAACCTTACCTTATACATTGCAATGGCGTCTCcagggggacagggaggaggggcaGTGTCTACAAGAGGAGCAGGAGCTAGGAGGATGAAATGGGCTCTGGAGTTGAGCTTGGGCAATGCTAGGGGTcgtggagacagacagagtaaccAGGGAGATGTGATGTACCCCATTGGATACTCAGACAAACCAGTCCCAGACACCAGCATCCAGGAAACAGACAAAAACCTGGTGGAAAAGCGTTGTTGGGACGTGGCCCTGGGCCCTCTGAAGCAGATTCCCATGAACCTTTTCATCATGTACATGTCTGGGAACACCATCTCAATCTTCCCTATCatgatggtctgtatgatggccTGGAGGCCCATCCAGGCTCTCATGTCCATGTCTGCCACATTCAAGCTGTTGGAGAACTCTAACCAGCAGTGGCTCCAGGGGCTTGTCTATTCTGTAGGGAACCTGTTGGGCTCGGCATTGGCTATCTACAAGTGTCAGTCAATGGGTCTTCTCCCAACTCACTCCTCTGATTGGCTCGCTTTCATAGAACCGCCTCAGAGGATGGAGATcatgggtggagggatggtatTGTGAAGAGGACAGAAGACGCACACATACTGAAATATGCTGAACTGTTCTGTTAATACATTAAATCTCTTCCAAGTCTTTTCAATTCTCTGGCTTTTAGGTTTTTGTGGACTCCTCAAGCTTTTTATTTATCTACATTTTGTTTGTCATTTGAGATTATTTGTCACAGGTTATAAAATGttacagaacacattcaacatCTGATAATAGGAAAATGTAATGTTTGTAAAACCGTTCATCATTCTACTAAATCCACACGGTCAATTTAAGGTGTCACCATAACACATTTTTCATTTATCTTTGTGTCAAATAAAATGGTTAACTCGTTAATTTGTTTGTTAAATAGAATGGTGACAGTCATTAGAAATGTGTGGAACTAAGTTTACTGGCAAATGTGGAAATGTTGTTCTGGAATAAACACTGCAGTGAAGGAAAGGGAAAGTTGGGCACATTGGTGAAGGCTATGAAGATACATTTGAAGAGGTATATGTAGGTTACTTTTGCATTGAATCACAAAGGCAATTCATTAGTGTCCTGGCGAAATCCGGAATGTTAgttgttagaaatattgtttctTATACATTTTGTACATTGCAAAGTCTTAAGTCATTTGAAAAACAATTCTCATGTATGTACACTTGCAAGTTGGAAGCTACAAATCGACAACTTTGTAAATAAAATGGATT

Function

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23565 EMC4, TMEM85; ER membrane protein complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1989641 lncRNA upstream 1077 40052766 ~ 40053023 (+) True G1737345
TU1989640 lncRNA upstream 2334 40051449 ~ 40051766 (+) True G1737344
TU1989605 lncRNA upstream 54338 39999415 ~ 39999762 (+) True G1737310
TU1989599 lncRNA upstream 67491 39978736 ~ 39986609 (+) True G1737306
TU1989571 lncRNA upstream 93814 39960074 ~ 39960286 (+) True G1737283
TU1989647 lncRNA downstream 977 40061664 ~ 40061904 (+) True G1737351
TU1989666 lncRNA downstream 16946 40077633 ~ 40078011 (+) True G1737370
TU1989668 lncRNA downstream 18659 40079346 ~ 40079585 (+) True G1737372
TU1989614 lncRNA downstream 41894 40102581 ~ 40102871 (+) True G1737318
TU1989682 lncRNA downstream 46384 40107071 ~ 40107333 (+) True G1737385
XM_021577744.2 mRNA upstream 3455 40002898 ~ 40050645 (+) True LOC110500394
XM_036957810.1 mRNA upstream 56159 39972320 ~ 39997941 (+) True LOC110500393
XR_005038599.1 mRNA upstream 58547 39972319 ~ 39995553 (+) False LOC110500393
XM_021577738.2 mRNA upstream 94870 39953279 ~ 39959230 (+) False LOC110500392
XM_021577746.2 mRNA downstream 25499 40086186 ~ 40102011 (+) True LOC110500395
XM_021577747.2 mRNA downstream 52289 40112976 ~ 40116166 (+) False LOC110500396
XM_021577748.2 mRNA downstream 57604 40118291 ~ 40131867 (+) False LOC110500397
XM_021577749.2 mRNA downstream 57604 40118291 ~ 40131867 (+) False LOC110500397
XM_036957812.1 mRNA downstream 76939 40137626 ~ 40158575 (+) False LOC110500398
TU1988631 other upstream 177150 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 764430 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 844615 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 1129172 38867967 ~ 38924928 (+) True arrb2b
TU1986976 other upstream 1971826 38077551 ~ 38082274 (+) True LOC110500301
TU1989649 other downstream 2019 40062706 ~ 40063325 (+) True G1737353
TU1989857 other downstream 340817 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 491324 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 932468 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 964023 41024710 ~ 41029136 (+) True G1738119

Expression Profile