RNA id: XM_021577746.2


Basic Information

Item Value
RNA id XM_021577746.2
length 2578
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110500395
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40086186 ~ 40102011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGAGTTGTTGTTCTTATTTTTTACGCCATATGCATTGACACGAGCGCACATTTCGTATTAAATTCCTTGTATTAGAGTACAATAAATCAACGAATTTTTAAATTCGGATTCACATCTTCGATTTCACTTGGATCGTTTTCACTTTTGAACttgtttctttgtttcttttTATCCAACCAACTGTCGCACTCCCCCTATCCCTCGGACTGGTTTTGGCTCTCTGCATCTTGATAACGTAACATTTTGAGAGGCACTTTTATAACTTTTATATCACAACTTTTTACGCAACGCCAAATAGTTGCGGCGGAATTAAACTGTCGACGCACCGGGATATTCATCGCCATTCAGTGAATACCTCGCACATCAAACCTCAAAGGGTTAGTTTGAAATCTGGTTGGGTCTGACCTACTTTTTACAGATATTGAGTCTGTCAAGGCTTGCCTAGTCGCCATGGAGAGGCGGGACAGTCGCCAAGCAACATCCGATTACCCTCACCCATTTATACACAAACTGAAACTGACCAGGGCACAGAGAATACGGGGCATTGTGTTGGGCACCATCCTCTTCCCCATACGAATCTTCCTGGTCGCCCTCTGCTTTCTGATGATGTGGCCTATTGCCCGGCTGCGTTTGGCCGGCTTGTCAGAGGAGGAACGCTCCCGGCCAGTAGTGGCGGGGTGGCGTTGGTGGCTGCTACATTCCATCATCCGGTTCCTGAGCCGGGCAGCGTTTTTCTTCCTGGGGTTCTGGGTCCGGGTTAAAGGACGTAGGGCAGGACGTAAGGAGGCTCCTGTGCTGGCAGTGGCGCCTCACAGTAGCTTCCTGGACATGTTGGTACTGCCGGAAACCCAGTTAGCTACAGTGGTGTCCCGATCGGAAAACCAAAAAATCCCTGTTATAGGGGCCCTCCTGGAGTTTAACCAGTCAGTGATGGTAAATAGGAAGAATCCAGAGTCCAGGAAACAAGCTATTGCGCAGATCATAGAGAGGCTCACCTCCAACGGCTACTGGCCACAGatgCTGATGTTCCCAGAAGGCACCACTACGAACGGCACCATTCTCATCAAGTTTAAACGTGGTGCCTTCCTGGCTGGAGTCCCAGTCCAACCAGTCCTGCTGCACTACCCCAACAAACTGGATACTGTGCGCTGGACCCACAAGGGCACAACCTGGATTGAGACACTGTGGCACACCTGCTCTCAGCTCTACACTAACGTTACTGTTGAGTATCTGCCAGTATACACCCCCTCTCAGGAAGAGAAGGATGACCCTAACCTGTATGCAGACAATGTCCAGAAACTCATGGCCAAGACTCTGGGTATCCCAGCTACAGACCATGTGATGGAGGGGCGTGTTCCTACCAGAATGCTAGGGGGGCTCTCCCTCCCCCTAGAACCCCCAGCCAGAGAAACCCTCTCACTGCTGCACAAAGACGGtCTCAGAGAGTCAGAGGTTGAGGCGGCACTAACTCAGATGATTGACCGTTGTCAGTccgaacagggttggagggctgTTGTGGATGAGCTGGTCCCTCTTatgggactgactgacagacagactgctgCTAAGATCTGTGGTCTCTACTCAAAGGATGACAAGGTGGATCTCAGACAGATCTATCTAAGTGTTGCAGCTGTCTCCAGCTTTATGGACTTCAAGTCTCTCCTTCACATCGCCTTCACTctgtATGACAGAGAGGGTAGTGGCAGTCTGACAGCGGTGGATGTGTCTGACCTGATGGGGGCGCTAGTGGGGAGTCCTCAATACCACACAGAGGAGCTGTACTCAGAACTGTCCCGGAGAGGCGTGCCCACTGAACAGGAGCTGTTCAGAGTGCTGACCACCCATCCCACCTATCAGAAGCTGATCAGTGAGTACCTCACATCTGAGGGGGCTGAGTCTACAACACCATCTACTCCTCTGTTCAATGGGAAGGTTGGGAACAATAATGAAGGATTGCCTAACGACAACAGATCGGCGTTGTTTCATAAAACCGCTGATAACAGCTCGGCTCTACCCCACAAGAAGGATGACTAAGTGAAGGAACTCTGAAGCATAGTAATTGAATTCCTGACTGGGCAGTCTAATTACTGTGATCTGAAGGGCTATGTCCCTTCTAGAAATTATATTTATGTACTCTGAAGGCTAGTCTGTTGCTGGCTATGTCTCCAATGACACCCAATGATGACTTTGATGGCGAATCCCCTTCTAGGAATTATATTTCAATGAGGCTTACACTGTTTTGAGAAATGGAGAAAACCTGCACAAAGCAgctctacagtatctacagtaagCCCCATAGATGTTAAATGGAATATATGTCATGACTAGTTTGTGTGAGTCTCAGATTAGTTATATATTGTTTACAATGTACATAGCTAGCTATGATTATTTCACGCAGTTCCGAGTTTGTTCGTCAAGATGCTGTGAAAATAGTATCACAATAGTTATTTATAAATGTGATGTTTTAATAAAATTAAGAGTTCTTGTATTTTGTACTGCTTGAAAGAGATGTGGTATGTGAataatttgtattgtttaaagAACAAAATATATAAACCAAATGTAAATGACAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13512 LPCAT4, AGPAT7; lysophospholipid acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1989668 lncRNA upstream 6601 40079346 ~ 40079585 (+) True G1737372
TU1989666 lncRNA upstream 8175 40077633 ~ 40078011 (+) True G1737370
TU1989647 lncRNA upstream 24282 40061664 ~ 40061904 (+) True G1737351
TU1989641 lncRNA upstream 33163 40052766 ~ 40053023 (+) True G1737345
TU1989640 lncRNA upstream 34420 40051449 ~ 40051766 (+) True G1737344
TU1989614 lncRNA downstream 570 40102581 ~ 40102871 (+) True G1737318
TU1989682 lncRNA downstream 5060 40107071 ~ 40107333 (+) True G1737385
TU1989688 lncRNA downstream 10081 40112092 ~ 40112291 (+) True G1737391
TU1989611 lncRNA downstream 11082 40113093 ~ 40116155 (+) False LOC110500396
TU1989612 lncRNA downstream 11082 40113093 ~ 40116217 (+) True LOC110500396
XM_021576742.2 mRNA upstream 25488 40053881 ~ 40060698 (+) False tmm85
NM_001160551.1 mRNA upstream 25499 40054100 ~ 40060687 (+) True tmm85
XM_021577744.2 mRNA upstream 35541 40002898 ~ 40050645 (+) True LOC110500394
XM_036957810.1 mRNA upstream 88245 39972320 ~ 39997941 (+) True LOC110500393
XR_005038599.1 mRNA upstream 90633 39972319 ~ 39995553 (+) False LOC110500393
XM_021577747.2 mRNA downstream 10965 40112976 ~ 40116166 (+) False LOC110500396
XM_021577748.2 mRNA downstream 16280 40118291 ~ 40131867 (+) False LOC110500397
XM_021577749.2 mRNA downstream 16280 40118291 ~ 40131867 (+) False LOC110500397
XM_036957812.1 mRNA downstream 35615 40137626 ~ 40158575 (+) False LOC110500398
XM_036957811.1 mRNA downstream 35617 40137628 ~ 40158575 (+) True LOC110500398
TU1989649 other upstream 22861 40062706 ~ 40063325 (+) True G1737353
TU1988631 other upstream 209236 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 796516 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 876701 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 1161258 38867967 ~ 38924928 (+) True arrb2b
TU1989857 other downstream 299493 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 450000 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 891144 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 922699 41024710 ~ 41029136 (+) True G1738119
TU1991654 other downstream 1786800 41888811 ~ 41891367 (+) False G1739103

Expression Profile