Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1989612 |
| length | 904 |
| lncRNA type | sense_over |
| GC content | 0.43 |
| exon number | 2 |
| gene id | LOC110500396 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 40112976 ~ 40116217 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006364 | rRNA processing | biological_process |
| GO:0001522 | pseudouridine synthesis | biological_process |
| GO:0060215 | primitive hemopoiesis | biological_process |
| GO:0019013 | viral nucleocapsid | cellular_component |
| GO:0072588 | box H/ACA RNP complex | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0030515 | snoRNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1989688 | lncRNA | upstream | 802 | 40112092 ~ 40112291 (+) | True | G1737391 |
| TU1989682 | lncRNA | upstream | 5760 | 40107071 ~ 40107333 (+) | True | G1737385 |
| TU1989614 | lncRNA | upstream | 10222 | 40102581 ~ 40102871 (+) | True | G1737318 |
| TU1989668 | lncRNA | upstream | 33508 | 40079346 ~ 40079585 (+) | True | G1737372 |
| TU1989666 | lncRNA | upstream | 35082 | 40077633 ~ 40078011 (+) | True | G1737370 |
| TU1989616 | lncRNA | downstream | 13935 | 40130152 ~ 40133485 (+) | True | LOC110500397 |
| TU1989674 | lncRNA | downstream | 36846 | 40153063 ~ 40154421 (+) | True | G1737377 |
| TU1989727 | lncRNA | downstream | 104142 | 40220359 ~ 40229315 (+) | False | G1737422 |
| TU1989730 | lncRNA | downstream | 104142 | 40220359 ~ 40229315 (+) | False | G1737422 |
| TU1989731 | lncRNA | downstream | 104142 | 40220359 ~ 40229315 (+) | False | G1737422 |
| XM_021577746.2 | mRNA | upstream | 11082 | 40086186 ~ 40102011 (+) | True | LOC110500395 |
| XM_021576742.2 | mRNA | upstream | 52395 | 40053881 ~ 40060698 (+) | False | tmm85 |
| NM_001160551.1 | mRNA | upstream | 52406 | 40054100 ~ 40060687 (+) | True | tmm85 |
| XM_021577744.2 | mRNA | upstream | 62448 | 40002898 ~ 40050645 (+) | True | LOC110500394 |
| XM_036957810.1 | mRNA | upstream | 115152 | 39972320 ~ 39997941 (+) | True | LOC110500393 |
| XM_021577748.2 | mRNA | downstream | 2074 | 40118291 ~ 40131867 (+) | False | LOC110500397 |
| XM_021577749.2 | mRNA | downstream | 2074 | 40118291 ~ 40131867 (+) | False | LOC110500397 |
| XM_036957812.1 | mRNA | downstream | 21409 | 40137626 ~ 40158575 (+) | False | LOC110500398 |
| XM_036957811.1 | mRNA | downstream | 21411 | 40137628 ~ 40158575 (+) | True | LOC110500398 |
| XM_021577758.2 | mRNA | downstream | 49875 | 40166092 ~ 40194474 (+) | False | LOC110500400 |
| TU1989649 | other | upstream | 49768 | 40062706 ~ 40063325 (+) | True | G1737353 |
| TU1988631 | other | upstream | 236143 | 39875756 ~ 39876950 (+) | True | G1736484 |
| TU1988209 | other | upstream | 823423 | 39233664 ~ 39289670 (+) | True | G1736098 |
| TU1988123 | other | upstream | 903608 | 39179287 ~ 39209485 (+) | True | nat16 |
| TU1987950 | other | upstream | 1188165 | 38867967 ~ 38924928 (+) | True | arrb2b |
| TU1989857 | other | downstream | 285287 | 40401504 ~ 40403685 (+) | True | LOC110500409 |
| TU1990244 | other | downstream | 435794 | 40552011 ~ 40553853 (+) | True | G1737866 |
| TU1990461 | other | downstream | 876938 | 40993155 ~ 40997320 (+) | True | G1738057 |
| TU1990529 | other | downstream | 908493 | 41024710 ~ 41029136 (+) | True | G1738119 |
| TU1991654 | other | downstream | 1772594 | 41888811 ~ 41891367 (+) | False | G1739103 |
