RNA id: XM_036957812.1


Basic Information

Item Value
RNA id XM_036957812.1
length 4362
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110500398
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40137626 ~ 40158575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagggagggagagagaaggaggagaaaacGGAGAAGGTGGGGGGTATTAATTATAATCGAGTCGTTTATGCGTGGCACCAGTGTGGATAACAAACAGCTAGATGTTATGCAATTATTCATCTCAAGAAAAATTATGAATTTGACATTTTTACTTCAAATATCGATTTTTAACAAAACGTGTATTtaatgtaaacatttgttggcGATTTTTTTAATTGAGCAACATAGCCATAGAGGCACATCTTGGGAAGAATTGAACGTAACCATCGTCCATACATCGAGGAGGAAGGAAGAGTGTCTTTTGATAGAGAGGTTTCAAGGCGTGGAAAGTGCGTGAAACAGCAAACACTCATCCGGCCTGTGCTACTCTGAGAAGCCAGGAGCTGAAGTTTGAAGGTGCAGAAGACTTGCTATGGCGGTAAACTTGGACAAGGAAGCGTACTACCGCCGAATCAAGCGCTTATATGGCAATTGGAAGAAAGGAGAAGATGAGTTTGGCAAAGTGGATGCCATGGTGGTCTCTGTTGGTGTGGACGAGGAGATTGTATACGCCAAATCCACTGCCCTGCAGACATGGCTGTTTGGCTATGAGCTGACCGACACCATCATGGTGTTCTGTGAGTCTAAGATCATCTTCCTGGCCAGCAAGAAGAAGGTGGAGTTTCTTAAACAGGTGGCTGTCACCAAGGGCAACGAGAATGCCAATGGGGTTCCACCAATCACACTGCTCATCAGGGAAAAGAACGAAAGCAACAAGGCTAACTTTGAGAAGATGATGGAGGCGATCAGGGCCAGTAAGGAGGGCAAGACTGTAGGTGTGTTCAGCAAGGACAAGTTCCCCGGAGAGTACATGAAGAGCTGGAATGACATGATCACTGCTGAGGGCCTGGAGAAGGTGGACATCAGTGCGGTAGTGGCCTACACCATGGCTGTGAAGGAGGATGGGGAGCTGGCTTTGATGAAGAAAGCTGCAGCCGTCACCAGCGAGGTCTACTCTAAGTTCTTCAAGGAGAGGGTCATGGAGATCGTGGACGCGGATGAGAAGGTGCGCCACAGTAAGCTGGCGGAGTCTGTGGAGAAGGCCATCGAGGAGAAGAAGTACCTCGGGGGAGCGGACCCCTCGACAGTGGAGATGTGTTACCCCCCTATTATACAGAGCGGGGGCAACTACAGCCTCAAGTTCAGCGTCGTCAGTGACAAGAACCACATGCACTTTGGGGCCATCACGTGTGCCATGGGCATCCGCTACAAGTCCTACTGCGCCAACCTGGTCCGGACCCTAATGGTGGACCCCCCACAGGAGATGCAGGACAACTACAGCTTCCTGCTACAGGTGGAGGAGGAGCTGCTCAAAGAGCTGAAACATGGTGTGAAAATTTGCGACGCGTACAGCGCCGTGCTGAACTACGTTAAGAAGGAGAAACCAGACCTGGCGGCCAAACTCACCAAGAACCTCGGGTTTGCCATGGGGATAGAGTTCAGAGAGGGCTCCCTGGTCCTGAACAGCAAGAACCAGTACAAACTGAAGAAAGgtATGGTACTGAGCATCAGCCTGGGGTTCGCTGACCTGGTGAATAAGGAGGGGAAGAAGGAGGAGCAGAAGAAATATGCCCTGTTCATAGGAGACTCTGTACAGATCAACGAGGATGATCCAGCCACAGTTCTCACACCGGTCAAGAAGAAGTTAAAGAACGTTGGAATTTTCCTAAAGAAcgatgaggaagaggatgaggaggaagatgcAGACGATGCAGAGGAGCTACTGGGGAAGGGAGCGCGTGGACAAGCTTTACTTCAGGACCGGactaggAACGAGATGACGGCGGAGGAGAAGAGGCGGGCTCACCAGAAGGAGCTGGCCAATCAGGTGAACGAGGAGGCCAAGCGACGTCTGACGGAACAGAAAGGAGAGCAACAGGTCCAGAAGTCCAGAAAGTCCAATGTCTCCTACAAGAACGGCTCTCAGATGCCTCGAGAGAAAGACATTCGAGATATGAAGATCTTCATCGATAAGAAATACGAGACTGTCGTCATGCCCGTCTTCGGGATCGCCACCCCTTTCCATATCGCTACCATCAAGaacaTCAGTTCGTCGGTGGAAGGAGACTGGACCTACCTGAGGATAAACTTCTACGTTCCCGGCAGCTCACTGGGACGCAACGAGGGCAACATTTTCCCCAACCCTGACGCCACCTTCGTCAAAGAAATTACGTACCGGGCGTCGAACCTCAAGGCGCCAGGTGACCCAACGGTCCCGTCCACCAACCTCCAGAATGCTTTCCGCATCATCAAGGAGGTGCAGAAGCGCTACAAGACCCGGGAggctgaggagaaggagaaggagggcaTCGTCAAGCAGGACTCGCTGGTCATCAACCTGAACCGCTCCAACCCCAAACTCAAAGACCTCTACATCAGGCCCAACATCGCCCAGAAGAGGATGCAGGGGTCGCTGGAGGCCCATACCAATGgttTCCGCTTCACGTCCGTCCGTGGGGACAAAGTGgacatcctctacaacaacatCAAACACTCCCTCTTCCAGCCCTGTGACGGAGAGATGATCATcgtgttgcacttccacctcaaGAACGCCATCATGTTTGGTAAGAAGCGTCACACGGATGTACAGTTCTACACAGAGGTGGGTGAGATCACCACAGACCTGGGCAAGCACCAGCACATGCACGACCGCGACGACCTGTACGCCgagcagatggagagggagatgagacacAAGCTCAAGTCTGCCTTCAAGAACTTCATCGAGAAGGTGGAGACCCTCACCAAGGAGGAGCTGGAGTTCGAAGTGCCCTTCCGGGACCTCGGGTTCCAGGGTGCCCCCTACAGGAGTACCTGCCTGCTGCAGCCCACATCCAGCTCCCTGTGTAACACCACTGAGTGGCCTCCGTTCGTGGTGACTCTGGATGAGGTCGAGCTGGTTCATTTTGAGCGTGTTCAGTTCCACCTGAAGAACTTTGACGTGGTCATCGTCTACAAGGACTACAGCAAGAAGGTCACCATGATCAACGCAGTGCCCGTCAACTCACTGGACCCCATCAAGGAGTGGCTCAATTCCTGTGATATCAAGTACACAGAGGGGGTCCAGTCTCTGAACTGGACTAAGATCATGAAGACTATAGTGGACGATCCAGAGGGCTTCTTTGAACAGGGGGGCTGGTCCTTTTTAGACCCTGAGAgtgagGGGGAGGGAGCGGAGGATGACTCTGAGTCGGGGGAAGATGAGACATTCAACCCTTCGGCAGACGAGAGCGAGGCAGAGGAGGAAGACAGTGATGAAGACTATGACTCAGAGAGCGAGGACTCTGACTACAGTGCATCGCTGGGCAGTGAAGAGGAGAGTGGTAAAGACTGGGATGAGTTGGAAGAGGAGGCCAGGAAAGcGGACAAAGAGTCTCACTATGAGGACGCGGAGGAGACCTCGTCGGCCAATAGGAAGAGAAAGGGCCGCTCGTCAGCCCCACCCCCCAGCAGCAAGAAGAAACGGCGCCACTGAACGATAACATCAccagacacgtacacacacacacacacactgccaaaaCATTGTCAATTCGATCAccctctcctcccattcatcttcGCTCTGTCACTCCTCTTCATCTTGCTTTCAAAcaaaaatacatacacacacacacattaaaaacacacacactatacaatgtGTATATAGAGGTAGCACCCCCATGCGTTTGTATTAGGCATTGAGTGTCTTGATTAAAATGGGCATATCGTACCTGGCAACCGACAAACTCCATCCATCTTTTTTATTTTGTTCTATTCCTTCCTTCATTCctccttcctttcctttggcAACTCTAACTCTCCTGTTTTCAGGGGCCAGGTACATATGTGTGTGttgaaaagttttttttattgCAAACCATTGGTTTTCTGGTAAACTGTTTCTGAACTAATAGATCTAGTAAGCAGTGACGATGATATACAGTATCTTCTGCCAAGCGTTTTATAAGACTTTGTGAAAActttcctttcctccttcccCATCGCTCTGTCACAATCCATCTATTCCCTTGCTCTTTTATCTTCTTGGACGCAGTTTATTTGTTGAAAGATTTATGTTCATTTTTGGAGGGCAGATATCAATATTCAGTTTTCcaattccttttttttttaatgggggtTTGtacagaccgacacacacagacacactcacaaacCCCACACTGTcgctttcccttcctctctccttccctcctttcctaccccctatcctctctctttttGTTCATCCTGGATAGGTAGACTGTTGTattgttaataaaaaataaaaaaatccagattTTCTTTGTTTGGGTAATAAAATTGAAAAGGAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1989616 lncRNA upstream 4141 40130152 ~ 40133485 (+) True LOC110500397
TU1989612 lncRNA upstream 21409 40113093 ~ 40116217 (+) True LOC110500396
TU1989611 lncRNA upstream 21471 40113093 ~ 40116155 (+) False LOC110500396
TU1989688 lncRNA upstream 25335 40112092 ~ 40112291 (+) True G1737391
TU1989682 lncRNA upstream 30293 40107071 ~ 40107333 (+) True G1737385
TU1989727 lncRNA downstream 61784 40220359 ~ 40229315 (+) False G1737422
TU1989730 lncRNA downstream 61784 40220359 ~ 40229315 (+) False G1737422
TU1989731 lncRNA downstream 61784 40220359 ~ 40229315 (+) False G1737422
TU1989732 lncRNA downstream 61784 40220359 ~ 40229315 (+) False G1737422
TU1989733 lncRNA downstream 61784 40220359 ~ 40229315 (+) False G1737422
XM_021577748.2 mRNA upstream 5759 40118291 ~ 40131867 (+) False LOC110500397
XM_021577749.2 mRNA upstream 5759 40118291 ~ 40131867 (+) False LOC110500397
XM_021577747.2 mRNA upstream 21460 40112976 ~ 40116166 (+) False LOC110500396
XM_021577746.2 mRNA upstream 35615 40086186 ~ 40102011 (+) True LOC110500395
XM_021576742.2 mRNA upstream 76928 40053881 ~ 40060698 (+) False tmm85
XM_021577758.2 mRNA downstream 7517 40166092 ~ 40194474 (+) False LOC110500400
XM_021577757.2 mRNA downstream 7521 40166096 ~ 40194474 (+) False LOC110500400
XM_021577759.2 mRNA downstream 7526 40166101 ~ 40194474 (+) False LOC110500400
XM_021577756.2 mRNA downstream 7528 40166103 ~ 40194474 (+) False LOC110500400
XM_036957813.1 mRNA downstream 7556 40166131 ~ 40194474 (+) True LOC110500400
TU1989649 other upstream 74301 40062706 ~ 40063325 (+) True G1737353
TU1988631 other upstream 260676 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 847956 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 928141 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 1212698 38867967 ~ 38924928 (+) True arrb2b
TU1989857 other downstream 242929 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 393436 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 834580 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 866135 41024710 ~ 41029136 (+) True G1738119
TU1991654 other downstream 1730236 41888811 ~ 41891367 (+) False G1739103

Expression Profile