RNA id: XM_021577759.2


Basic Information

Item Value
RNA id XM_021577759.2
length 2818
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110500400
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40166092 ~ 40194474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGAGTTCACTTTCGGTTCCCTGCTCagctcccttcccctcccccagCTCAGCCTCCCCCACCTTCCCATCATGGCTACCTCCATGGATCAGTCCACTGTTCTTGAAGATGAGCTCACCTGTCCCGTGTGCTTGGACCTGTTCCGGGACCCCCACCTGCTGCCTTGCGGCCACAACTTCTGCCTCCTCTGCGTCCGCCGCCTCAAACGCCAGGCAGAGCGAGGTCGCTTCCGTTGCCCAGAGTGTCGCGAGAGCCACCGCTGCTCCGCAGCCTCGCAGAAGAACTTCAAGCTGGCCAACATCGCCGACGACTACCGCCTCCGGGGACAGGCAGCGTTGTCAAGACCACAACAACCAGATGCTGGCCCCCCGGCAACAGCCAAGACCCCTGTGTCCGTGCCCTGTGACTACTGCCGCCCAGGGGACATTAGCGAGGCGGGGAAAGGGGAACCTGGAGCTCCCGGGGCTGGAGGAGAGGTGGTGTTTGCGGTGAAGACGTGTCTGAAATGCGAGGTGTCCATGTGTCAGGAGCATGTGAAGCCCCACCTGGAGCTACCTGCATTTAGGGAGCACCCCCTGACCGAGCCCCTGGGAGACCTGAGGAAGAGGAAGTGTCCCGAACATGATGAGATGTACCGCTACTACTGCATGGACGACAGGATGTGTGTCTGTAATGCCTGTACCATAGAGGGGGGCCACGCCGGACACACCATCAAGACCCTGAAGAACACCATGAAGGGTCTGAAGGGCATTCTGGAGACCCAGCTACAGAAGGTGGACAGGAAGTTGAGCAAAGCAGAAAAAACTCTCCAGGAGCAGAAAGTGGAGGAACAAATTAACAAGaaGTTCCTGGAGGACTCGGACCAGCGGATCATGATGGTGGGGGAGGAGTTACAGGTCCACCTGGAGGGCTTCCTCACAGCCTTAAGGGACTGTACCTGCTCCCAAGAGAGCGAGTGTGGCCCCAACATCCAGCGGAACATAGCCAAGGTGACCCAGGACCACGCTCGTCTGCAGGATGTCCACAGCAGAATCCAGAACCTCGCCCAGGAGAACGACCCCTTCCGCTTCCTAGAGGCATACAAATCATCAAGCAAAAATTTCTGCAGGCAGTTGAAGAAGCCCCTCTTCTACCCAGAGTATGTTGGTGTGGACACTGAAGGCCTGGCCGAGGCCCTGGAGGTTAAGCAGGATGACTTCCTCACTTATGTACGCTCCTGCATCTCTCAATTCATCGACGATATCTGTCCTTCAGTCAGGGAAGAGCCGGACaccggaggagaggaggatgaagatgacGACGAGGAGGATGGCAGTGATGGAGATGAACAAGAGGAGGAAATGAGCGAGGAAGAGGAGGGTATACACGACCTCGAGTCAGCAGACGAACTCTACGGtgaggaagatgaagaggagatTTATTCGAACTGATGAAATGACTATGTGGTGAATTGTCAAATCCATTCTTCCATTTAAGTCAAACTGTCTCTCATAGCCTCCCACTGACATCAATATTTGACTATGTAAAAATGTTACTTTGAATTTAGGATTTTCCCAACCATTTTGGGAAACCTTTAAAATATTATACATTCTACATCAATGTTTCGAAGAGGAGATGTTTATGGGTGCATGGAACCATAtttcatatatagtgcactacttttgaccaggctttGGTCAAATGTTGTACACTATTTAGGCCagggctattcaactatattcttACAGATGTAAAAAAGGTTAATTGCAGGGGGGGCAGACATTTTCTACATGCGTTTAGTTTAAGGAAGaactgtttaaaaaataaaaccacACACCAGTAAAGTACTTAAAAGTAATTAGGTCATTTTAAATTCTGAAAACAAAGTATCtaaaaaaataacacatatgtcaAGTCCGGTAATGCCAAATTCCAGTATGCTTTGAATTTATTTCCCTCAGTCATTTGGTGCGTTTTTTTTGTCACACTTCCTCTAGCAAGTCCTCGTGGGCAtcagagagggaaacagaagTGTGCTTAGCTTTCAGAAATGGGGTCAAAAAGTATTTGTTCCCTTAAACCGTTCAAATGCTAGAGCCAAACTCATATAAAGAAAGAAGAATCCAAATGTCACATAGGTGCTAGAAACGATAGTGCTTGTCATTTTGGCACTGAATGTCGGATTTTCACAATTGATCAAAGGGCCAGTCTAAATAAATAAACGGGCCGGATCTGGCCCGCAGGCCACCAGTTGAATAGCCCTGATTTAggcagtagggtgccatttgggatgaagactATATTTTTGTAGTTCAAGACTATACTGTTATAGCTAAACACTGGGTTTCTAATTCTAACCTCAAACTGTTTTATTTTTTGACCAAAGCACTTGTTCCTAACCTGACTGGTgtgccagatgggtggggtttgcaGTTTTAGATATACTCCATTGCTTTCATTAAACTAGGCAAACTCAATCAAGTAcagtatttgaaattatttaaaaTGGTTTTTAGACCCAGGTCTGGGGCCATAGTCATAAAACACCTCAGTGTAGGAGTTTTGcctttttagatcataatgaataagttAATATTGACAGGGGGAACCTGTTCCTAGATCTGaaatcctactctgagacgctttatgaatacaggacCTGGTCTAGTATATAGTGCATTCGGGTAAGGATTCAGAtacccctcaactttttccatattttgttacattttagaataaggctgtaatgtattaaatttgtttttttcccccaaaatcaatttacacaaaataccccataattataaagcaaaaacaagtttagacattttagcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1989674 lncRNA upstream 11680 40153063 ~ 40154421 (+) True G1737377
TU1989616 lncRNA upstream 32616 40130152 ~ 40133485 (+) True LOC110500397
TU1989612 lncRNA upstream 49884 40113093 ~ 40116217 (+) True LOC110500396
TU1989611 lncRNA upstream 49946 40113093 ~ 40116155 (+) False LOC110500396
TU1989688 lncRNA upstream 53810 40112092 ~ 40112291 (+) True G1737391
TU1989727 lncRNA downstream 25885 40220359 ~ 40229315 (+) False G1737422
TU1989730 lncRNA downstream 25885 40220359 ~ 40229315 (+) False G1737422
TU1989731 lncRNA downstream 25885 40220359 ~ 40229315 (+) False G1737422
TU1989732 lncRNA downstream 25885 40220359 ~ 40229315 (+) False G1737422
TU1989733 lncRNA downstream 25885 40220359 ~ 40229315 (+) False G1737422
XM_036957812.1 mRNA upstream 7526 40137626 ~ 40158575 (+) False LOC110500398
XM_036957811.1 mRNA upstream 7526 40137628 ~ 40158575 (+) True LOC110500398
XM_021577748.2 mRNA upstream 34234 40118291 ~ 40131867 (+) False LOC110500397
XM_021577749.2 mRNA upstream 34234 40118291 ~ 40131867 (+) False LOC110500397
XM_021577747.2 mRNA upstream 49935 40112976 ~ 40116166 (+) False LOC110500396
XR_005038601.1 mRNA downstream 61516 40255990 ~ 40257045 (+) True LOC118942929
XM_021577764.2 mRNA downstream 127696 40322170 ~ 40352889 (+) False LOC110500405
XM_021577765.2 mRNA downstream 127698 40322172 ~ 40352889 (+) True LOC110500405
XR_002470100.2 mRNA downstream 206978 40401452 ~ 40404840 (+) False LOC110500409
XR_002470101.2 mRNA downstream 599975 40794449 ~ 40837182 (+) True LOC110500418
TU1989649 other upstream 102776 40062706 ~ 40063325 (+) True G1737353
TU1988631 other upstream 289151 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 876431 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 956616 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 1241173 38867967 ~ 38924928 (+) True arrb2b
TU1989857 other downstream 207030 40401504 ~ 40403685 (+) True LOC110500409
TU1990244 other downstream 357537 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 798681 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 830236 41024710 ~ 41029136 (+) True G1738119
TU1991654 other downstream 1694337 41888811 ~ 41891367 (+) False G1739103

Expression Profile