RNA id: TU1989857


Basic Information

Item Value
RNA id TU1989857
length 1439
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110500409
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40401452 ~ 40404840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaccttttgcAAATGGTCGCATGCGATTGGACACATGGAGGAGAGAATCATTTTCGCAGTATCCTCAAAACCATGTACTTTTGACACAACTTCTGACAGCTACAGGGACATAAACACAACAAAAATGCTGATTGGAGACAAGTGTCCACGATAGTAGGATTGCCAGAAGAAGACTGtaggaggaagtggagaggacTCAGGGAcaggtatcagagagagagaagggcagagaaagagaagaggtctGGGTCAGCAGCTTCAGGCCAGCAGCCTTGGCGCTTCTGCCACATTCTTTCTTTTCTGGATCCATTTATTGTGCCTAGGGCAATGAGTGGCAATTTTACAGCCAGACCCTCTACTACGTCATCCACAAGTGTTGTTGCCACCGGCGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCACCTCCACGAGTATGACCACTACCGGTGCAGCCATGGAAGACGATGAAATGGAGGAAGCACCTCTGGATCTAGGACCACCTGAGATAATTATGAACCTCACGGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGccgtggagagagacagaaactaaGAGAAACAACGTCACACCAGGCGTCATCGGAGGTACCAGCCCCCAGATCCACTCAACTCATTTCAGCAGAGGCTCTCCTCCAAGACGTCGAGAGGGATGCAGCCCAACCTGATGCTCACAGGAAGGAGGATGAAGAGACCCTCTTTGCCATGAGCCAGGTGCCAACACTGAAGAGGCTGCCTCAGCAAAGAAAAGCAGCAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGCTCacaggaaggacaggaagaggagtTGTCTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACACGTCAGTTCTGTTTAAATTCAGTCAATACATAAAGTAATTTGTTTATAAAGTCTTAGGATAGCTTTCATTATTAGTGTTGCATAGATTTCTGAATTGAAACTCATACGTAGTTTTCACAGATGCTCTTGGTCTCTTACGAGACTAAAggtcaatatatttatttcatttaaaaccACTTGAAAACCAGGGTGTTGAAACATTTTGTGAAGTTATGTTCCATCGACTGGTCCGTGACGTCCAGGGGCCATTTGTTTGTTTAGCTGTCTTATGGCTACATATTATTCCCTTtttctcagagacagagacacacacacacctcttcgtACCTCAGATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTAAGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTACACATTCatttaaaacaaataataataatttacacGCACGTACACACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1989846 lncRNA upstream 13267 40386954 ~ 40388237 (+) True G1737519
TU1989771 lncRNA upstream 21838 40270818 ~ 40379666 (+) True G1737449
TU1989727 lncRNA upstream 172189 40220359 ~ 40229315 (+) False G1737422
TU1989730 lncRNA upstream 172189 40220359 ~ 40229315 (+) False G1737422
TU1989731 lncRNA upstream 172189 40220359 ~ 40229315 (+) False G1737422
TU1990145 lncRNA downstream 31633 40435318 ~ 40437210 (+) True G1737789
TU1990183 lncRNA downstream 57669 40461354 ~ 40461650 (+) True G1737815
TU1990184 lncRNA downstream 58668 40462353 ~ 40468149 (+) True G1737816
TU1990190 lncRNA downstream 70918 40474603 ~ 40474831 (+) True G1737821
TU1990194 lncRNA downstream 74792 40478477 ~ 40478687 (+) True G1737825
XM_021577764.2 mRNA upstream 48615 40322170 ~ 40352889 (+) False LOC110500405
XM_021577765.2 mRNA upstream 48615 40322172 ~ 40352889 (+) True LOC110500405
XR_005038601.1 mRNA upstream 144459 40255990 ~ 40257045 (+) True LOC118942929
XM_021577758.2 mRNA upstream 207030 40166092 ~ 40194474 (+) False LOC110500400
XM_021577757.2 mRNA upstream 207030 40166096 ~ 40194474 (+) False LOC110500400
XR_002470101.2 mRNA downstream 390764 40794449 ~ 40837182 (+) True LOC110500418
XM_021577792.2 mRNA downstream 443307 40846992 ~ 40855143 (+) False LOC110500419
XM_021577798.2 mRNA downstream 646504 41050189 ~ 41058764 (+) True LOC110500424
XM_021577800.2 mRNA downstream 704761 41108446 ~ 41125926 (+) False LOC110500425
XM_021577799.2 mRNA downstream 704761 41108446 ~ 41125934 (+) False LOC110500425
TU1989649 other upstream 338179 40062706 ~ 40063325 (+) True G1737353
TU1988631 other upstream 524554 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 1111834 39233664 ~ 39289670 (+) True G1736098
TU1988123 other upstream 1192019 39179287 ~ 39209485 (+) True nat16
TU1987950 other upstream 1476576 38867967 ~ 38924928 (+) True arrb2b
TU1990244 other downstream 148326 40552011 ~ 40553853 (+) True G1737866
TU1990461 other downstream 589470 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 621025 41024710 ~ 41029136 (+) True G1738119
TU1991654 other downstream 1485126 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 1491644 41895329 ~ 41897856 (+) True G1739103

Expression Profile