RNA id: TCONS_00050644


Basic Information

Item Value
RNA id TCONS_00050644
length 645
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_025774
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54761569 ~ 54771809 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGGCGCGGCGCGAGCGGATACTCTTCTTCAAGTGTCTAATTTTGGATCTGTTGTGGCGGCTGTTTGCGTTGGATGACTTTTCCATCAGCGCTGTGAATTACATTGAACCAATGATAGAGGGAAACCAGTATGAGCTCCAGTGTGACGTTTACAATGTGCCTGCGGCTCAGAGTCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGACTCAAACCAACTTCACTAACACATTTGAGAGTCCAGTCAATAAAACCTTTATACTCCTGATCCATCCAAAACGATATGACGATGGAGCTCAGTACAAGTTTGAGCTGAAACCTTTGGAAATATCAAAGTCTGTCAACATTACTGTAAATTTTAAACCGGTCATCAATGAGACCATACTGCCCTCTGTGGTGCCTGTGTTTCGAGGTTATCCAGTGAATCTTTCTTGTATAGCTGACGGAAAGCCAAAACCAATAATCAGCTGGAAGCACAAAAATGGAATCATTTACAGGGAATATCTTACCGTAACAGAGTCCACGCCTGAGAACGTGGTGTGCGTTGCAAACAATTCCATTGACGCCGTCCGCAGAGAAGTAAAAGTGATCTTAAAAGGTatatatttagcatgttttggcTTACATTTCCAACCTTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-12 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ICAM2 (intercellular adhesion molecule 2) and ICAM3 (intercellular adhesion molecule 3).

Ensembl:

ensembl_id ENSDART00000180983

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052802 lncRNA upstream 425041 54332726 ~ 54336639 (+) False XLOC_025769
TCONS_00052803 lncRNA upstream 425041 54332747 ~ 54336639 (+) True XLOC_025769
TCONS_00052801 lncRNA upstream 458056 54289678 ~ 54303624 (+) True XLOC_025768
TCONS_00052384 lncRNA upstream 477495 54283767 ~ 54284185 (+) True XLOC_025767
TCONS_00052800 lncRNA upstream 490335 54270703 ~ 54271345 (+) True XLOC_025766
TCONS_00052804 lncRNA downstream 66571 54834509 ~ 54836517 (+) True XLOC_025776
TCONS_00050655 lncRNA downstream 346159 55114097 ~ 55114757 (+) False XLOC_025783
TCONS_00050657 lncRNA downstream 354724 55122662 ~ 55123322 (+) False XLOC_025784
TCONS_00052805 lncRNA downstream 618277 55386215 ~ 55387657 (+) True XLOC_025788
TCONS_00052806 lncRNA downstream 714182 55482120 ~ 55488241 (+) False XLOC_025789
TCONS_00050641 mRNA upstream 9316 54744069 ~ 54752364 (+) False XLOC_025773
TCONS_00050642 mRNA upstream 12509 54744090 ~ 54749171 (+) True XLOC_025773
TCONS_00050640 mRNA upstream 171857 54581987 ~ 54589823 (+) True XLOC_025772
TCONS_00050639 mRNA upstream 183695 54572725 ~ 54577985 (+) True XLOC_025771
TCONS_00050638 mRNA upstream 193719 54553931 ~ 54567961 (+) True XLOC_025770
TCONS_00050645 mRNA downstream 8179 54776117 ~ 54791664 (+) False XLOC_025775
TCONS_00050646 mRNA downstream 8179 54776117 ~ 54814530 (+) False XLOC_025775
TCONS_00050647 mRNA downstream 8537 54776475 ~ 54791691 (+) True XLOC_025775
TCONS_00050649 mRNA downstream 81145 54849083 ~ 54875874 (+) False XLOC_025777
TCONS_00050648 mRNA downstream 81145 54849083 ~ 54875874 (+) True XLOC_025777
TCONS_00050635 other upstream 694041 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 1932674 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 2141505 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 4686490 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 5629203 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050662 other downstream 531105 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 715575 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 2868436 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 3058001 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 3230052 57997990 ~ 57998559 (+) False XLOC_025817

Expression Profile

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