RNA id: XM_021577792.2


Basic Information

Item Value
RNA id XM_021577792.2
length 2690
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110500419
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40846992 ~ 40855143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTAAGGAATCGTCTAAAATTCCTGGAGTAGAACACGGAAGTAGGATTGGAGAcgaatttgttttgattttgaaCATTCATTCTGTTGACTAAAGAAATACCAACTGACTCAGTTGAATTTGCAACGCAAAACTAATTTGATAGAAAATGTCTAAACTAGAGTTCTTGCGTGTATTTTTGAATGAGCGTTTAACGGCTGCTGCTGTGGAGATTTTCGGGGCAGTTGAGGAAACGGTAGTGGGGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGTGTATCACACCAAAGATAACATGTATAGactccctgcaGCTCTCTCCCATAGTTTCAGAAGAAGAGGCTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGGGCACAcacagattaaagaggaacaggaggaactcGGCACCAGTCATGAGGAAGAGCAGCTTCAAAGGCTGGAGGCTGATATCATAGAGTTTAAATTCACTCCTTTCTGTGTGAAAAGTGAATGGGATCAGGAAGACCCACTTTGGTCCTTGACTCTTCCCCAAACCCAGACTGTGGAGAACAGAGACAGTGACTCTAAACTAGTGGATTCTAAACCTTTTGGCACTGTGACCCACCTAAAGGGTCTCGAGAATCCCTGTGACCCTCCATATAATCAAAACAATGACTCCAGCTATTTCTCAATTGTAAGCCGCAACCCAGTAGGACTTGACATTAGCCCACCATTGGGGGAACAATGTTCCAAACCCACCACCATGTCTAGAATAACTCACCGCTGCTGTGACTGTGGTGAAACATTTGCTCAGAAAGCTGACCTGCAGAGGCATGTTACTCTCCCCGAGAAGAGACCCAGTGAATGCCGCTTCTGCAAAACAAACTACAGCTCCACCTGTAAACTGGAGGCACATGTCCGACTCTGTCATGGTGGGAAACCCTACACCTGTCCTGTTTGTGGCGAGACCTTCAAAGTGAAAGGAGATCTTTCCAAACACACAATGATTCACACAGAcgagaaaccatttagctgtaGCTGGGATGACTCTGGGAAGAGCTTCAATCTCAAGGAACACATAACCATAGATATACTGACCGGAaagaaaccatttagctgtggtgTCTGTGGAAAAGGCTTTAGTCAGAAGGGTTCCCTTAAGAAGCATATATTTACTCACACGGGAGAGAAACGATTTACCTGTAGTGACTGTGGGAAAGGCTTCCATCAGaagtggaccctatctgaacaTATACgtactcacacaggagagaagccgtttagctgtggtgactgtgggaaaagcttcaatTTGAAGGGGAACCTAAGGAAGCATAaactgactcacacaggagatAAACCATTCAGttgtggtgactgtgggaaaagtTTCAATTTGAAGGGGAACCTAAGAAAGCATAAActcactcacacaggagagaaaccgtttAGCTGTTgtgactgtgggaagagcttcaatctGAAGCAACACCTAAACATGCATAAattgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcacTCAAAAGTCTAGCCTGCTGACACATGTGAAAACAATCCACAAAGGAATAAAACTGGAGGAAAATTGATAGAGGCAATTCAATTATGACAAATAGATATTATGTAAGAAGAAGGAAATTAAAGGGTAGGATGTGGACATCactcgtggggggggggggggggggattaatgATGAACAGAGTATTTTAGGAAACACACAGACCTGCTGTTCAAAGTCTGTTGATGTTTTCACGGCATTAGAAACAGGAATTCCTCTTAGTTTGTTTTGGAATTTCTCTCAGGGCGATGAGAAAATGGTCTGACTGATGTTATTTGtacataatattttttttaaaaaggtacTTTCCATAAAATGCTATAAACTGTTTCTCATCCATTTTGACCTAATGCTGCTTATCTATATGATAACATAAGCTGCAGGAGAGTACAATTTTGGTCTGATTTTCTTCATTTTAGGTTAAAAAGAAGAGTGTCGTCCTCTTACATCTGTCTGTACACTTGATATGTCGCTGTGGTTTGTATAATATTATTTAAGATCGTGCTGTCATAATGCATTTGATGTAAGCAATTGTGGGCCCATTTTGAATCTAGAATGACTCCATTACCCACAATGCTCATCGACTGGATTTTTACACAATTACCATGGCAATTATGCGTCACAATAATAATATACATTTTTGCAACATGCAGCAATCCATGATATTGAAGGtaaggtaacactttacttgacacccagcagcataacacattatgacacggtcataactACTTTATGGCTGGTAATgacacctacagtgcattcggaaagtattcaggccccttgactttttctacattttgttacgttacagccttattttaaaatggtttaaattgttttttcccctcatcaatatataccccctaatgacaaagaaaacttttttttagacattttacaaATTGTATTACAATTAGACTGAAATATCACACATAGATTGCGtcgctgcgcagctattttcagagatagttgtccttctggaaggttctcccatctccacagaggaactctggagctctgtcagagtgaccatcgggtgtttggtcatctccctgaccaaggccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1990317 lncRNA upstream 41448 40696559 ~ 40805544 (+) True G1737928
TU1990313 lncRNA upstream 54502 40764293 ~ 40792490 (+) False G1737927
TU1990311 lncRNA upstream 54502 40771140 ~ 40792490 (+) True G1737927
TU1990315 lncRNA upstream 59594 40764293 ~ 40787398 (+) False G1737927
TU1990314 lncRNA upstream 67947 40764293 ~ 40779045 (+) False G1737927
TU1990437 lncRNA downstream 1447 40856590 ~ 40856726 (+) True G1738034
TU1990450 lncRNA downstream 53080 40908223 ~ 40908672 (+) True G1738047
TU1990451 lncRNA downstream 53598 40908741 ~ 40909526 (+) True G1738048
TU1990452 lncRNA downstream 54698 40909841 ~ 40910518 (+) True G1738049
TU1990453 lncRNA downstream 56012 40911155 ~ 40911941 (+) True G1738050
XR_002470101.2 mRNA upstream 9810 40794449 ~ 40837182 (+) True LOC110500418
XR_002470100.2 mRNA upstream 442152 40401452 ~ 40404840 (+) False LOC110500409
XM_021577764.2 mRNA upstream 494103 40322170 ~ 40352889 (+) False LOC110500405
XM_021577765.2 mRNA upstream 494103 40322172 ~ 40352889 (+) True LOC110500405
XR_005038601.1 mRNA upstream 589947 40255990 ~ 40257045 (+) True LOC118942929
XM_021577798.2 mRNA downstream 195046 41050189 ~ 41058764 (+) True LOC110500424
XM_021577800.2 mRNA downstream 253303 41108446 ~ 41125926 (+) False LOC110500425
XM_021577799.2 mRNA downstream 253303 41108446 ~ 41125934 (+) False LOC110500425
XM_021577801.2 mRNA downstream 253345 41108488 ~ 41125926 (+) True LOC110500425
XM_036957838.1 mRNA downstream 275683 41130826 ~ 41183998 (+) False LOC110500427
TU1990244 other upstream 293139 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 443307 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 783667 40062706 ~ 40063325 (+) True G1737353
TU1988631 other upstream 970042 39875756 ~ 39876950 (+) True G1736484
TU1988209 other upstream 1557322 39233664 ~ 39289670 (+) True G1736098
TU1990461 other downstream 138012 40993155 ~ 40997320 (+) True G1738057
TU1990529 other downstream 169567 41024710 ~ 41029136 (+) True G1738119
TU1991654 other downstream 1033668 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 1040186 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 1429913 42285056 ~ 42288500 (+) True cxcl8c

Expression Profile