RNA id: XM_036957838.1


Basic Information

Item Value
RNA id XM_036957838.1
length 7593
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC110500427
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41130826 ~ 41183998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCTGAAAGAAAGGAAATTCACGGTAAAGTTACAATTTAGTACGACCAAAATAATAGTTATTCAATTGTATAGAAGAAACGGATTCACTTTTAATTGCACAGACGAAAATTTTAACGTGTAGCCTAGACAGGCACACCGAGGTTTTTGCAACGAAGAGGCAGAAGGGAAAGAAAGGCTATTATACCCCTACGTTTGAAACCTTTTAAGCTAACCTACCTCCAGGATGTCGGAGCGAGGAGGGCTCCCGCGGACTGGAGGTGCCCCCTCCCCGCACTTGCAACCCTCCAAACCGGTCACGATCACCTCGAATCGCCCTGTCCACATGAACCTATACGCCACCTGGGAAGTGGACCGCTCTTCACCAAGCTGTGTGCCGAGGCTGTTTAACCTGACCCTGAAAAAGCTGATCATGTTGAAGGAGCTGGACAAAGACCTGACGTCTGTGGTCATCGCTGTCAAACTACAGggtTCTAAGCGTATCCTGAGGTCCAATGAGATCTTGTTGTCTTCAGCgggactgacagagacagacctTCAGCTCACCTTCTCTCTACAgTACCCCCACTTCCTGAAGAGAGACGCCAACAAGCTTCAGATCATGCTGCAGCGTCGCAAACGCTATAAGAACCGAACCATCCTGGGCTACAAGACACTGGCGCTGGGTCACATCAACATGGCTGAGGTGATGCAGCATCCCAGTGAGGGGGCCCAGGTGTTGGGGCTCCACAGCCAGTTGAAGGATGCCTCGGTGCCCGTGGCGGAGGTCAGGGTCTACTCCCTCTCCAGCCAGCCCATTGACCACGAGGGACCCAAGGCCAAGATGTCTGatCGTTCTCCAGACATTGATAACTAttctgaggaagaagaggagagctACTCATCAGAACAGGAGGGCAGTGACGACCCGATCCacggccagtatCTCTATGATGAAGAGGATGAGGTGAGGAAGAAGAAGCCCCGACGGAAGCTCACCTCCAACGCTTCCATCACTAGACAACCAAACATCAAGCAGAAGTTTGTGGCTCTGCTGAAAAGGTTCAAGGTTTCTGATGAGgtGGGTTTTGGTCTGGAGCATGTCTCTAGTGAACAGATCCAGGAAGTGGAGGAGGATTTAGATGAGCTCTATGACAGTCTGGAGATGTACAACCCCTCTGACAGTGGCCCTGAGATGGAAGAGACGGACAGCATCCTCAGCACACCCAAACCTAAACTCAGGCCGTTCTTTGAGGGAATGTCCCAGTCCAGCTCTCAGACGGAAATCACCAGCCTGAACAGCAGAGGAGGGAGCCTGGGACGAGACGCCTGCTTCAGCCCTCAGGGGGAGCAGCGGCCTGTGGAGATGAAACACTCTCGCAGTCGCAACCTGGAGGTGGAGACCCTCTCTGAGACGGACACGCTGGAGTTGACGGATCAGGAGATGTTTCCGGAGGGCCCCTGTATTACGGTGTCAGGGGCTGAGAAACCCCGTACGCCCCTGAAGAGCAGCAAGAGTGGAGGAGGACAGACCATGCCCTCCCCCAGGCTGGATGGCAGGGGCCCCACCCCCAAACAGAAGAGACAGAGCAGTACTCCTATGAAAGAGAGACAGCTGTCTAAACCAATCAGTGAAGGGGGGAGGACCAACAGCTCCGACAGCGAGAGATCCCCCGAACTGGGACACAGCTCACAGgttCTGAGGAAGGCGGTGTATGATCAGCTGAACCAGATCCTTCTGTCTGACGCGGCTCTGCCTGAGAGTCTCATCCTGGTCAATGGCACAGACTGGCAGGGCCAGtacgTGGGAGAGCAGCTGCAGGTACAGAGGCACCCGGTGGTGTGTACGTGTTCAGGAGCTGAGATCCAGGCGGTGCTTTCTGCTGTCCTCACACGCATCCAGAAGTTTTGTAACTGTAACTCGTCCATGCCCAGGCCGGTCAAGGTGGCAGTGGTGGGTAGTCAGAGCTACCTTGGTGCCGTCCTGCAGTTCTTTGTCACACAGTTGGCAAGCAAGACCTCTGATTGGCTCAACCACCTGAGGTTCCTGGTGGTGCCCCTGGGCTCTCATCCTGTTGCTAAGCACCTGGGTGCCCTAGACAACCGTTACAGCTCTGCGTTCTTAGACGGGGCATGGAGAGACATGTTCAGCCGCTCTGAACCCccacagacagACCTGTTGGACGTGGCCGGTAGGATCTCCCAGTACGTCAGTGGCGCCACCGTCACACACCAGCTGCCCATCGCTGAGGCCATGCTTACCTGCAAACACAGGACGCACGATGAAGATTCCTACCAGAAGTTCATTCCTTTTATTGGGTTGGTCAAGGTTGGTCTGATTGAGCCAGACACTTCCTCTACAGGAGAAGCAGAAGAGGGcgtggcagggagcttggctgTTCCCTCTACGTCCCCTCCCACCCACGGCTCTCCCACCGGGCTGATCAAAGAGGCggccactcccccctcctctccatctatgAGCAGTGTTCTCGCAGTACAGGGGAGCCCCAGTATGTCCCAAGGTGTGGATGCCATTGGGTTGCAGGTGGACTACTGGCTGGCGTCGCTGGCGGAGAAACGCCGAGAGGGCGAACGGCGTGACACAGGCTGTAAGAACACCCTGAAGAGTGCCTTCAGATCCCTGCAGGTCAGCAGGCTACCAGGAGGGGGCAGCAGTGAGACACAGGCCCAGGTCAGCACCATGGCCATGACCGTGGTCACCAAGGAGAAGAACAAGAAGGtTCCCACCATATTCCTGGGTAAGAAGCCGAAGGAGAAGGATGTCGACTCTAAGAGCCAGGTCATTGAGGGTATCAGCAGACTCATCTGTTCTGCCAAGCAGCATCAAACCATCCTGAAAGtgtccatAGACGGAGTGGAGTGGAATGACGTCAAGTTCTTCCAGCTGGCTGCCCAGTGGCCCACCCATGTCAAGTATCTCCCTGTTGGACTGTTTGGTTACAACAAACCCCCCTCCTAGGGTCCACCCTGTACCCCTCGCCCAATCCCGTCCCACCTACGCACACAGACCCCCCCCGCCTCTCGGAACGCCGTGGCGACTAATATCGGTCAATTACGATGAAGGGTTGAGGGGCCGAATGTATTTGCTATGTTTTGTCTTATTTCTCTatagtagggagggagagatgggtcgGATATGGGGTGCAACgctactagtcactttaatgaatTGAAATGCCCCTCTCGCTGTCTAGCGTGTGTGTATGAGGGGCCCACAGCACAAGATAACGGGCTGCCGTTCAACTAATCCTAACGATGAGATGCACCCGCATGAATAACTCCCATGACGTGCCCTGACCCTTGACCCCTGACATCTGACCCTTTAACCCTTAACCTTTAAAATCCTGACCAGGTAGTTCTCTTATCACCTTGAACCTGCCCGGTGTCATCAAAGGCCAACCTGCATGCTGTACTACTACACCACCACGTGCCAGGACATGTTATAACAGTAATGCCACGGTTATTATGGGGTATGGAGGGGAACTTGGGATCCAAACATACCGTACATGTGCATGAAATGGAATGAACAACAGACGACACCTACAGTAGCAATGCTTTTTCTGCTCCCTAATTACATGAAAATGCTTTTTTTCTCTCACCAATGATGTACAGTAAGTTGACATGTTATGCATATGAAGAGCAGAAAATATAAGAGAAGGCTCTAGTTTTTTTGTAACGACATTTGAACTCCCTGTGTACAGCGAGGGTGCCGACTTAAGAGCTCACTGTTTGCCCCAACTTTACTGAGAAGAGGCAACATTTCTGCTGTCTGTAAGGCTTGTCCCTTTGTCAACCTCAGTTGTTGTTGTCAGCGTTGCTCTCTTGATCCACCCTCCACTGTATAGTCCTCCTTCCGCTTGTGGACGTACAGTATATCACCTGTGTGGGGTTGTGCATGCTGGGATTTGTAGGCTGAGCCTCGTGCTGAGGTTAAATTGGGGGACAGGAGCTGTGACCGTCATCTTCATTTTTTGCGATGCACTTCTAGTAACTATAGTAGCTAGGTATCTTACTCCAAAGCACAATGTCGCACGCTACTAGTGACTTTTTATCCCTGTCTTTACCTGTCAAGGATTGCAAAAAAAACTTTCCCAAAATTACCAAATTTTCCAGAAATCCTAGTTGGAAGGTTTCTGGAATTAGGAGGGAATAAGTAGTAAATCCGGAATCTCCCGACCTGGATTTCTGGAAAACATGCATTTTCCAGCCCTGCCTGTGATAGACGGGCAGCGTTCACGCCACTGAAATGGTGGTGTGTTGTGTCTAGGGTGTTGTGAGGTGGCCAGTGTCCAGTGACAGGTGTGATGTTATGTAATGTGGTAAAACAATATTGAAATATCTATGAAACCAATTTTATAAGTAACCCACGCGACACAGTATGATTGTTTTATGTGTGGCCACGTGTTTGTGTCGAGATGTGGTCAATATCGCTTTATGAGTTCTGTAGGCTGCGGTATCAGCGGCCAGACGTTTGCCTTGTAGACTGACACAAAGATAGGTGACACCAAATTACCTTTTTTAAGAGCTACTAACGGTTCTGGTGCTTTTTAAGAAGAAACTGCAGACAAATAATTTGTATCCAAAGAATTTGACTTAAATAATTGGTTTTCAATTTAGTAGCAAAGTCTATGGTCGAATAATGTACCTGCAAAGGTACATTCAAATTAGTATATTTTGAATGAAATGGCAATGTGTTGTAAGCAAAACACTAGTTCTCTTGCTGTCTAAGATTGAAAGCTAACGAGTGTTAAGTAGCTTAGCCTTGTGTCACCTACAAAGTAACCTTCCCCATCTGTGCGGAGTGAAGAATTGTGACAAATATCAAGTATTACAATGCCAATGTCTCAATTTTTGCTGTTATTATTATGATTTTCGGGGTAACTTAGAGGTAGGTTTTTCAGCTTAGGTGTAACAGTGTTAAAAATTGTGACGTCAACACCTTGTGTAACTCAAATTTGGCCCTGTtctcttttttttggggggggggggggggggggggctcgtaCAAAGGAAGGTTTTTGCACCAAGGGCTTCAAACTGATTGAGAGCATAAGTACACAGCTATGCATGTTCCACAAATCAGTCTGAATGATAGAATGTACAGATCTCAAACAACAAGGATGTATTTCCAAAAATCATTAGAGGTATCATCTGAACTTAATTTGAATGTGCAGATAATATTCATTGTTAGTTTCTATTATCTCTTCTCAGTCTTGTCGACAAAAGCTTTATCATTTAGTAAACATACATTTTGGAGGTTTTAACACCATTTTACCAGTCCAgaatagggttgcaaagggaggatatattactggaaactttctaAGTTTGCCAGTAAAGTACCACCATTTTTGTAACTTTCAAGGATTTGATGTAATTTATCACATCTATTTGCCATTTTGGGTACTTCAGCTTATCACAGATGTCTTTCATTATCTGTGGCCTAATcacctatatataatataatcaAATAAGattttaaaatttaaaaaatgcaatgacaaagctgtaaaacgtTCCTAAGTATTAAtaatcaacttagtgaataccattggtgattaatatgagggtttcagcatgacatgtcaaccataacattttttacacacttatttattttactatgtcaatatgCCTTTGTTGTAAATGTgatggcagttgtgaaaaaagtcaatagttggaagagttgcagagttaattaAGAATAATGCCATTTTTGATTAGATGCTTTTAAACATTAATTTGGCTATTTTGTCTTGATCAGAGGGTGTATCCACTAGGAACTAATGGGTATTATGGACACAGATATGACAAATTAATACTATacattgattttttttattttttattttttttacatttactcaAGTTTAAATGACCAAAGTTACCATCGAATGCTATAGATTCCGGCAACTTTTGTAAATTACTGGTAGCTTTACCCTAGTCCATAACCACCTGTTATTTCACTagaacatttttgttttattatagAAAACACACAATAATAATCTCTCAACTCCATAGTCAGTTGACCTTGTAACCTCTGTGAGCTTGAATACTTTGTGCAACTTCCCTTTGAGTATCAAAGAAAGATATGGCAAAGGCAGTGGTCCTCTTGAAAGCAGACCATTTAAACCCTGCTTCTCATAGCAAGTGTCACTGCCCACCAGTCAAGGGCTAGACCCAGACCAATGCCTTCATGTGGACTTGGGCTCTTAATGCATATTTTAACTGAGACTGTATCCTACTGTATGAATGTTATGTACAACAGGGTTTTCTCTTTGGGAGAGACATTATTGCTTGAGGATAGTGAACCCTACCTGTAGCTACGCTActccctaaccacagatctaggatcagattacaattacccccccccccccccccctagttcTAACCATAACCATCAGCGGGATTAAAAGATATCTGACCCTGTGTCAGTGGTTAGGGGAGACTTTTACCGTCTCTGAGCAGAACAAAGGGGTCCAATTTCTCTATGCCTTGCAGCGTGTTATTAGCGTAATAAGGAGTGTAAGATGTATGATTCTATTTGAACCCCCGTCTCTTCATAGGGGGTTCATAAGCATTCACTGAATGGGACAAAGAAATCACTGCCAAGATGTCAAATGTTACATGGATATAACACCAAGCTGAAGCGGGGGTGATGTAGATATAGGTGTTAAATGTTTTTGGTGATAAAACTTTGTTCCAAAGTTATCATTTTAATGTTGGAAACATTATTTTTTCCCACTATACATTCCAATgtttactcctctctcctctccccctgtttcCAGTTCAGTCCCTTCTTTCACCTGTTGTACCATTAACATGTTTGTTTTCTCCTACCTTCTCTAGGCCTATTTGTCCTGTGTGGCTGTCTCTCAAACTTGTAcctgtgtctctacctgtattgaCCTGTAATGACTCTTATTGTCCATGACTAACGTATAGGGACAGCGGTTTTTGCTGACCATGTGACCCGACCAGGAACAATCCGCGGCCTTAGTTATAGTCTTTTGAGTACAGGGCTCAGACTGTCTCCCGAAACGGGTCATACGGTCCTGAAACACTTCTGTCCTGGAGGGGAAGAACAATATGATCTATTAATATGAATAAATCAATTTAGCGGATCAATACTGTCCTTCCTCTCTGCTATCATCACAATGTGTTTCAGAACAAATGGAGTGAGAGATCTAGAACAAACCGTAAGCTATCTAGAGTCTGGTAGGATTCCACAAGCTTTGCTTCTAATAAAGCCCATTTTGAAAGGATCCCTGCTTGTAACATAGCACTCTATCACAGAAGAGAATCCGTTTTTGCATAACACTGCTTAGACTACCCTTATGCTTGGTTGCAGTTTGAGGGGAGGATTCTAACGCTTGTGCATTTGGAGAGTAATTTTGCACATGCCATTGTTTCTTCAGCAGCTTTTTTGCCTTTTGTCTATAAACAGTAATAATGCTTGTACATATCACAACAGTACTTCTGTATTGTATCTTagtccttgttttttttatttgaaatgttttgtagtacTTTTTCATGATTATGTTGTCAATTAAACTGATGTGGGATGGAAAAGTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1990460 lncRNA upstream 133506 40955050 ~ 40997320 (+) False G1738057
TU1990458 lncRNA upstream 204536 40923375 ~ 40926290 (+) True G1738055
TU1990453 lncRNA upstream 218885 40911155 ~ 40911941 (+) True G1738050
TU1990452 lncRNA upstream 220308 40909841 ~ 40910518 (+) True G1738049
TU1990451 lncRNA upstream 221300 40908741 ~ 40909526 (+) True G1738048
TU1990607 lncRNA downstream 28396 41212394 ~ 41215752 (+) True prkd4
TU1990697 lncRNA downstream 166492 41350490 ~ 41351424 (+) True G1738265
TU1990724 lncRNA downstream 206349 41390347 ~ 41392653 (+) False G1738291
TU1990727 lncRNA downstream 271558 41455556 ~ 41525819 (+) True G1738291
TU1990740 lncRNA downstream 289265 41473263 ~ 41480556 (+) True G1738303
XM_021577799.2 mRNA upstream 4892 41108446 ~ 41125934 (+) False LOC110500425
XM_021577800.2 mRNA upstream 4900 41108446 ~ 41125926 (+) False LOC110500425
XM_021577801.2 mRNA upstream 4900 41108488 ~ 41125926 (+) True LOC110500425
XM_021577798.2 mRNA upstream 72062 41050189 ~ 41058764 (+) True LOC110500424
XM_021577792.2 mRNA upstream 275683 40846992 ~ 40855143 (+) False LOC110500419
XM_036957840.1 mRNA downstream 271 41184269 ~ 41201121 (+) False LOC110500431
XM_036957841.1 mRNA downstream 863 41184861 ~ 41201121 (+) False LOC110500431
XM_036957842.1 mRNA downstream 1155 41185153 ~ 41201121 (+) True LOC110500431
XM_021577808.2 mRNA downstream 19292 41203290 ~ 41215745 (+) False prkd4
XM_021577806.2 mRNA downstream 19292 41203290 ~ 41215989 (+) False prkd4
TU1990529 other upstream 101690 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 133506 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 576973 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 727141 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1067501 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 704813 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 711331 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 1101058 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 1170579 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 1317351 42501349 ~ 42502357 (+) True G1739440

Expression Profile