Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050646 |
| length | 1388 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 5 |
| gene id | XLOC_025775 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 54776117 ~ 54814530 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0098609 | cell-cell adhesion | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-080226-9 | Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); biliary atresia; inflammatory bowel disease (multiple); liver cirrhosis; and uveitis (multiple). Orthologous to several human genes including ICAM2 (intercellular adhesion molecule 2). |
| ensembl_id | ENSDART00000115076 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052802 | lncRNA | upstream | 439478 | 54332726 ~ 54336639 (+) | False | XLOC_025769 |
| TCONS_00052803 | lncRNA | upstream | 439478 | 54332747 ~ 54336639 (+) | True | XLOC_025769 |
| TCONS_00052801 | lncRNA | upstream | 472493 | 54289678 ~ 54303624 (+) | True | XLOC_025768 |
| TCONS_00052384 | lncRNA | upstream | 491932 | 54283767 ~ 54284185 (+) | True | XLOC_025767 |
| TCONS_00052800 | lncRNA | upstream | 504772 | 54270703 ~ 54271345 (+) | True | XLOC_025766 |
| TCONS_00052804 | lncRNA | downstream | 19979 | 54834509 ~ 54836517 (+) | True | XLOC_025776 |
| TCONS_00050655 | lncRNA | downstream | 299567 | 55114097 ~ 55114757 (+) | False | XLOC_025783 |
| TCONS_00050657 | lncRNA | downstream | 308132 | 55122662 ~ 55123322 (+) | False | XLOC_025784 |
| TCONS_00052805 | lncRNA | downstream | 571685 | 55386215 ~ 55387657 (+) | True | XLOC_025788 |
| TCONS_00052806 | lncRNA | downstream | 667590 | 55482120 ~ 55488241 (+) | False | XLOC_025789 |
| TCONS_00050643 | mRNA | upstream | 4308 | 54761569 ~ 54771809 (+) | False | XLOC_025774 |
| TCONS_00050644 | mRNA | upstream | 8179 | 54761680 ~ 54767938 (+) | True | XLOC_025774 |
| TCONS_00050641 | mRNA | upstream | 23753 | 54744069 ~ 54752364 (+) | False | XLOC_025773 |
| TCONS_00050642 | mRNA | upstream | 26946 | 54744090 ~ 54749171 (+) | True | XLOC_025773 |
| TCONS_00050640 | mRNA | upstream | 186294 | 54581987 ~ 54589823 (+) | True | XLOC_025772 |
| TCONS_00050649 | mRNA | downstream | 34553 | 54849083 ~ 54875874 (+) | False | XLOC_025777 |
| TCONS_00050648 | mRNA | downstream | 34553 | 54849083 ~ 54875874 (+) | True | XLOC_025777 |
| TCONS_00050650 | mRNA | downstream | 73252 | 54887782 ~ 54893706 (+) | True | XLOC_025778 |
| TCONS_00050651 | mRNA | downstream | 217155 | 55031685 ~ 55043150 (+) | True | XLOC_025779 |
| TCONS_00050652 | mRNA | downstream | 279051 | 55093581 ~ 55094399 (+) | True | XLOC_025780 |
| TCONS_00050635 | other | upstream | 708478 | 54067523 ~ 54067639 (+) | True | XLOC_025764 |
| TCONS_00050620 | other | upstream | 1947111 | 52828912 ~ 52829006 (+) | True | XLOC_025751 |
| TCONS_00050613 | other | upstream | 2155942 | 52620058 ~ 52620175 (+) | True | XLOC_025746 |
| TCONS_00050578 | other | upstream | 4700927 | 50069595 ~ 50075190 (+) | False | XLOC_025717 |
| TCONS_00050573 | other | upstream | 5643640 | 49132341 ~ 49132477 (+) | True | XLOC_025709 |
| TCONS_00050662 | other | downstream | 484513 | 55299043 ~ 55299158 (+) | True | XLOC_025787 |
| TCONS_00050664 | other | downstream | 668983 | 55483513 ~ 55483647 (+) | True | XLOC_025789 |
| TCONS_00050682 | other | downstream | 2821844 | 57636374 ~ 57639448 (+) | False | XLOC_025808 |
| TCONS_00050688 | other | downstream | 3011409 | 57825939 ~ 57829919 (+) | True | XLOC_025812 |
| TCONS_00050692 | other | downstream | 3183460 | 57997990 ~ 57998559 (+) | False | XLOC_025817 |
