RNA id: XM_036957840.1


Basic Information

Item Value
RNA id XM_036957840.1
length 5021
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110500431
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41184269 ~ 41201121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCCCACAGGGGTAGCGGTGAAGTCGTATCGCCCGGACTGGGCTTGTGGATTGGAGGATTGTGGGAGAATTCGAACAGCAGCCATTTTCGGGTCGCGACTGTCATTCTTCGAACACGCTTCTCAGACTGAGAACGCAGCGGGTCCCGCACTCTCTCCCAAAACAACTTCCCGAGGAAGGATCGGACGATGTCGTCTCACTTTGCGAACAGCCTTCCTGTATTTTGATCCCAACTCCCGTTGAAACCAACCGTCGCAAGACAAGATAACATTTTGACTAGGCTAATTCGAGCCCGGATCGAATTCATTAGCTAATCAGCAATGCTAACATAATTGGTAACAATGTATTGCTTGGAACTCGCAAGCTTTTAGACGCCAGCGACAATCGGATTTAAGCAAAGTGGTGTTCCGTGGGCTATTTTCTTTTTACAGCTAGTTCAGAAGGCTGAATAACGCGTCACCCGGATCTTACCCGTGGGGCAACAGCAGGGGAAAGCAGTGTGTGTGAACCCGGGTTATCTCCACCATGGTGTACCCACGCAGCGAGGAGGCCCTTGAGCGCCTGACCCAGGATGAGATAGTGCTCAACACCAAAGCTGTGATGCAGGGCCTGGAGACCCTCCGCGGGGAGCATGCCCAGCTCCTCACCTCCCTGCTGGACTGTACACAGCCACCTGCTGCCCAGGAGAAATCAGGCCTGCTGCGTAAGAGCCTTGAGGCCATCGAACTGGGCCTGGGAGAGGCACAGGTGATCATTGCCCTGTCGGGCCACCTGAGTGCGGTGGAGTCTGAGAAGCAGAAGCTAAGAGCCCAGGTCAGACGACTGTGTCAGGAGAACCAGTGGCTACGAGACGAACTGGCAGGAACACAGAGCAAGCTGCAGTGTAGTGAGCAGAGTGTTGCccagctggaggaggagaagaaacacCTGGAGTTCATGAACAAGATCAAGAAGTTTGACGACGACGTGTCTCCGTCTGAGGAGAAGGCTGCAGGCGAGACGTCCAAAGACAGCCTGGACGACCTGTTCCCCAACGACGACGACCAGGGACAAGCCCAGCCCAGCGGAGAGGCTGCGGCCCAGCAGGGTGGCTACGAGATCCCGGCCCGCCTGAGGACTCTTCATAACCTGGTGATCCAGTACGCCTCCCAGGGGAGGTACGAGGTGGCCGTGCCCCTCTGCAAACAGGCCTTGGAGGACCTGGAGAAGACCTCCGGACACGACCACCCCGACGTGGCCACCATGCTCAACATCCTGGCCCTCGTCTACAGGGACCAGAACAAGTACAAAGAGGCAGCCCACCTGCTGAACGATGCCCTGGCCATCAGAGAGAAGACTCTGGGGAAGGACCACCCTGCGGTGGCTGCCACTCTCAACAACCTGGCCGTGCTCTACGGGAAGAGGGGCAAGTACAAGGAGGCTGAGCCCCTCTGCAAGAGAGCCCTGGAGATCAGAGAGAAGGTCCTGGGCAAGTACCACCCTGACGTGGCCAAGCAGCTGAACAACCTGGCCCTGCTATGTCAGAACCAGGGAAAGTACGAGGAGGTGGAGTATTACTACAGACGAGccctggagatctaccagtccaaacTAGGAGCTGATGACCCCAACGTAGCCAAGACCAAGAACAACCTGGCTACATGCTACCTCAAACAGGGGAAGTTCAAGGATGCTGAGTCTCTGTACAAAGAGATCCTGACCCGAGCACACGAGAAGGAGTTTGGCTCAGTCAACAATGACAACAAACCTATCTGGATGCatgcggaggagagagaggagagcaagGCGAAGAGGAAGGATGCTGTGCCCTATGGAGAATATGGGAGCTGGTACAAGGCCTGCAAAGTTGACAGCCCAACGGTCAATACCACCCTGAAGAGCTTGGGGGCGCTGTACCGCAGACAGGGTAAACTAGAGGCAGCTGAGACACTGGAGGAGTGTGCTACCAAGACACGCAAGCAGGGTATAGATGCCATCAACCAGAGTAAGGTGGTGGAGCTCCTGAAGGACGGGGCCCCTGGAGGGGGAGAGCGACGTCAGAACCGGGAGGGTTTTAGTGGTCCCCAGCGGGGGGACTGTGAGGGAGATGATGGAGCAGAGTGGAACGGGGAGGGTAATGGTTCATTGCGTCGGAGCGGCTCCTTCGGAAAGATCCGTGACGCCCTGCGCAGGAGCAGTGAGATGCTGGTGAAGAAACTACAGGGCAGTGGCCCCCAGGAGCCCTGCAACCCAGGGATGACGAGAGCGAGCTCTCTCAACTTCCTCAACAAGAGTGCAGAAGACCCCTCACAGgatGCCAACACGGGCCTTTCGGAATGCAGAGGACTGAGCGCCAGCAACGTGGACTTGTCAAGACGCAGCTCCCTGATTGGTTAAACAGACAGGAGGCGGGACCAGGAGGAGGAAGGGCCAATGAGAAGAAACTGCTGGCTGTCCGATGCGATCAAAACACACTTCAGGTCCCAACACTCGCATTCAAGACATTTTCGTGAAGAAAAATTATCGAGAAAAACACGACTTGACATGGCTTTTTTTGTGACAAATCTCTGCGTCGGTCTGCTTCACTGTATACTTCGCTGGCATCAAACAGTACAGAAAATGAATATTTAACATGGCATGCTGCATACTAGAAAATGGAATGTCTGCACTACTTATGGTGACTGAGGCATAGCATCATAACAGAATAGCGAGTAATTATTATTGCAACTTGACAAATGTCTATCATAACTGCCTGGTACTTCTGGTGCAGACGCTCGACCATAGAAATCAGAATAGAACTAGTTTATCTGTCTTCGTGAAGCATCACACTCATTGACTACTAGTGGCATGAATACTGCAAATGCTAGCAACCTGTTCAATAGATATCACAGTGCTAGAGCGGTATAAATCATATAGGTTTTTAAGACGAGTTACAGGAGGTATGAACTACAGCTGTTAGAAGATTCAGCAAGGACCAAGACTGTACACAATATTTTGGCTGATGAAAATAATCGGAGTGCGTCTGTATTTTAACATCAAATGGGAGCAAAACAGCGCTGACCAGTTCAAGCTCACTATTTTGCCTTCTGaatttttgttctgtatatacTGGTTTAAGTTATTTAATATTTCTTTCTTTGTATATAACACAGACAGTTTTTGTTTAGAGCATAGGAGGACCTTTGTTGGGGAGACAGATGCTGGAATAATGTCAAACAAGTGAATAGAAACGGAGAAAATACACTCACCAGACAGTTTATTATATTACCCCtctagtaccgggtcggacccccccttttcctccagaacagcctgaattcttcggggGATTATACAAGGTGTCGTAAATGTTCCACAACGATGGCATCACGCAGTTGCTGCAGACTGGGCGGCAGGTACATTCATGCTGTGAACATcccgttccatctcatcccaaagatgCTCTATTGCAGAGataggcaaccctgttcctggagtgctgcagggtttTTTATCCAACTAGGCCCCACACCTGACCAACTACGCTAATTGATCAGGTCAGTAATTGCTTAAATTCAACAGACCTGAACTTCCAGGTCAGTTAACTCAAAAACATGGGCCAGGGTTGCCTACCTCTGCTCCATTGGTTGAAGTCTGGGGACTGCGCAGGCCATTTAAGTAAACTGAACTCGCTGTCAtgttccaggcaatgtttttttCCACTCTTCAATTGTCTAGTGTTGGTGATGGCGGGCCCTCTAGAGCCGCCGCTTCTTGTCTTCAgatgataggagtggaacccggtgggGTCGTCTGCTGCagtagcccatccgtgacaaggattaACAGGTTGTGCATtcccgagatgccgttctgcgcACCAGTGTTGTACAGCgttgttatttgtctgtttgtggcccgcctgttagcttgagcgattcttgccattctcctttctcgtcaacgagctgttttcgcccacaggactgccgctgactgacGATCATTCCACGctcagtcgcttaggtcactcgttttgcccattctaacttTTCAATCGACAGTAACTGAATgtctcgatgcctgtctgcctgctttatatagcaagccacggccacgtgactcactgtctgtaggagcgattcATTTTTGTGGACacggtggtgtacctaataaactggccggtGAGTAGAACAGTGAAAAGACAAACGGGGGAATATAGACTAGTAAAGAGGAGATCAACCAGGGGGGAATATAACTTCTAGTCAAATGTATTACTTAGTCTCGTTTGACAACAAGTGAAAATTTGACTTAAGCCGAATTTAGGATTTCCCCCGAAATCTATAGCCTGATCTGTCCAGATTTGTTTGCGCTCTAGCCAACTACGCTATCATTAGTTGCCTTACCAGACAATTCTGAACGTGATAAATAAGGCTGTTTAcataggcagcccaattctgatattttttttccactaatttgtcttttgaccaatcacatcagctcCTTTCACATCAGCTCTTTTTCAGAGCGGATCTGATTGTTCAAAAGAGCAAatagtgaaaaaatatataaatcgaGCTGCCCGTGTGAAAGTAGCTCATTTGGCGGAAGCACAGACCGATTTTTAAACCAGGTTCGTATTCATCAGGCACGAAACTGAAGAAAAGGGGCTGAAACCTAGGACAACCTGGACTtttccaataagaaatgctcgtTTTCTGTAGCTACGATGTGCGCTAATGAATATGAGGCTAACTTAGTTCTGCTCAGTCCTGGGGGGGAATACTGGAAATGCTGACATTGGACAAACCGTGCATCTCAGTCAGTGTAGCCCTTTAGGCACGGAGCGGTACAATCTCCAGACACACTATAAATGGAATGCACGGACAAAGCACAACATCACTCCAATCAAGTTAGATTTCCACGTAGTTGTACTGCTCTCTGATGAGTTTAGCGAGGTACCGTATCTGTTTCTTTAAGAGGTTAGCGTTGGGAGAACGGTAACGTTATGTAACTATCAATTCTTCTAGTTCTTGTAGCTTCTCTCTTTCCTTGGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1990596 lncRNA upstream 10950 41173034 ~ 41173319 (+) True G1738185
TU1990593 lncRNA upstream 16314 41167676 ~ 41167955 (+) True G1738182
TU1990585 lncRNA upstream 32571 41151458 ~ 41151698 (+) True G1738174
TU1990584 lncRNA upstream 33405 41150645 ~ 41150864 (+) True G1738173
TU1990583 lncRNA upstream 35738 41148322 ~ 41148531 (+) True G1738172
TU1990607 lncRNA downstream 11273 41212394 ~ 41215752 (+) True prkd4
TU1990697 lncRNA downstream 149369 41350490 ~ 41351424 (+) True G1738265
TU1990724 lncRNA downstream 189226 41390347 ~ 41392653 (+) False G1738291
TU1990727 lncRNA downstream 254435 41455556 ~ 41525819 (+) True G1738291
TU1990740 lncRNA downstream 272142 41473263 ~ 41480556 (+) True G1738303
XM_036957838.1 mRNA upstream 271 41130826 ~ 41183998 (+) False LOC110500427
XM_036957839.1 mRNA upstream 271 41130826 ~ 41183998 (+) True LOC110500427
XM_021577799.2 mRNA upstream 58335 41108446 ~ 41125934 (+) False LOC110500425
XM_021577800.2 mRNA upstream 58343 41108446 ~ 41125926 (+) False LOC110500425
XM_021577801.2 mRNA upstream 58343 41108488 ~ 41125926 (+) True LOC110500425
XM_021577808.2 mRNA downstream 2169 41203290 ~ 41215745 (+) False prkd4
XM_021577806.2 mRNA downstream 2169 41203290 ~ 41215989 (+) False prkd4
XM_021577809.2 mRNA downstream 2754 41203875 ~ 41215989 (+) False prkd4
XM_036957843.1 mRNA downstream 23651 41224772 ~ 41247133 (+) True LOC110500837
XM_021577811.2 mRNA downstream 56202 41257323 ~ 41266367 (+) True LOC110500434
TU1990529 other upstream 155133 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 186949 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 630416 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 780584 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1120944 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 687690 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 694208 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 1083935 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 1153456 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 1300228 42501349 ~ 42502357 (+) True G1739440

Expression Profile