RNA id: XM_036957843.1


Basic Information

Item Value
RNA id XM_036957843.1
length 4287
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110500837
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41224772 ~ 41247133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGATACACCCCCTTCCTTTAACTCTGCTATAGCATGCTACAGCCAGCATGACAGCTCAGGGAAAACGCATCGTttgagagcgcgagagagcgaaaGTAAGGGATAAGGAGGTGAGAACacgtggagagaaagaggagtagcGAGAAAAGTAGGAAGAAGATAAACATCAAGACTGTAAGAAATGAAATAAAGGAAGTCTCGTCAATCCATGCCTCtagtccatctctttctcttccccaggATTAGGACTATTTGGTCATCACAATGGCCCACAACCAAAGCATTCCCCTTCGCCTCCTGTCCAACTTCTCCCTCCCCCaaatcatccctccatccctcacaaacccctcctcatccctctatccattctcctcctctacatcgCCCCCCCTGTTCCTGTCCACCTCCATGCACATCCTGAACACCACCAACACGTCTGTTTTCGGGGGAAACCAAAGCATTGTGGGTAATACCACCTCCACGACAGTAGGGGCTCTCATCCTGTGTCTGGTCTTGCTGCTGGGCCTCCCCGGCAACCTCTTCATCATCTGGAGTATCCTGGCGCGTGCCCGCCGCCGCTCCGTCACCACCCTCCTCATCCTCAATCTAGCGGTGGCCGACGGCTCACTCATGGCGCTCACGCCCTTCTTCGTGATCTACCTGGTCAAGAAGACCTGGGTTTTTGGCAACATCATGTGCAAGATACTCTTTTACTTGTGCCTAGCCAACATGTACGCCTCCATCCAACTGATCATGCTGATGAGCCTGCACAGGCTGGTGGCCGTGGTGTGGCCTAAGCGTGTCGCTGCACTTGCTGGACGGAAGGCGGTACTGCGCGGAGTGCTGGTGTTGTGGACCATGGTGCTGGTCGCGTCCATCCCTGCGTTGCTGTTCAGGGACGAGCGGAAGACCGTGCACCCCAACGGGAAGAGCCGGGTAGTGTGTGAGTCGTTGCACAAGCAGCAGAGTCATGTGGTGCTCCAGTACACGTTGGAAACAGTGCTGGGATTTGTAGTTCCTTACGGGGTGATTATAGGCAGCTACATCTGCATCCTGCGGAGGATCAGGCAGACAAGGTTCAGGAGGAGGATCCGCAGTGAGAATCTCATCCTGGCCATCGTGGTAACCTTCGGTGTCTTCTGGTTGCCCTACCATGTCATCAACATTGTGCAGGTTGCTGCCGCACTTTCTCCAAAGGATTCAACTCTAAAAGCAAGGCTTGACCCTATTTGGCAGACCAGCCGTGCGGTCACTTCAGCCCTGGCCTTCATCAGCAGCTGTGCCAACCCTGTCCTCTACACTTTTGTTGGCAAGTCCTACATCAGGCGGGACGGCTTTGCCTTCATGGCCCGCTTGTTCGAGGGCACGGCGCAGGACTCTGGGACAAGGAAGAGCAGACAGAACAGCCAGAATagccgagagagagacagggatgcaaAGGAGGTCGGACTGAAGGAAAAGGAGGGAGACCTAGAGTCGACAACCAGCTCCAATGTCATGAGTCCCGTCTGTGTGAAACCTGTTAAGAATGGCAAGCCGGGCCCGATTCCGACTTAGGAAATGATGCCTTTCTTTTGCACATCTTTCCTACACATTTCTCAGTAGTTTACCTTATGAAGGTGAGTAATGGGCTTCGCAGGAGTGGTTCCCTTACGCGCACTGAAGAAATGTAATTCACCTGCTGAAAACCCTCTTACTtactggccaacagattttcttgtggagttttcattcaatagagttttcagtacatttatttagccatccctttaaatatggCGTACCTTTTAGTTTTGTTTACAGACTCAATACAATATATCGAGAGAATCGGTTCAGAAATGTTAGGGATGAATTAAAGAAAGCCATCTTAGTATATATGTGCATACTCATCTCAGTTTCAGCACCAAGTGGTAGATTTTAAAATACTCTGATCTTTTagattatttagggttaggaaattATTTGTGAATCCTAAAAAAAAGGTTTGGAGGAAGAAAATGGGTTGGATTCATTCAGAAAATTGCCACGTTCAGATCTTTAACTCATGGTAATTTTGGATGATTAGTGAACAAAGAATTATAATAGGGAGAATAGTGTGAAATAGTAGGCTATACCCTCATCTATTTCCTgcactaaccatggaactgtgtgATGACACATCCAAGTATTGCACCATACGTTGTGTTCAAACTGTTACGTTTGGTCTGTGCTCCTCTCCATAATGATTGAATTAGCTAtgtcttaaaatatatatatatatatatatatatatatatatatatatatatatataaactgttactaatgatcctcacCAACAACCACATGCCCGTGATggagtttacagaggaagcaaatgaaGGTTAACAAAATAATGTAATTAAATGGAACAATAATGTAGACTACACaaactgaagggaactaacagtaaattggcagttgaatatgtGTTGTTATTAGGCCTACTGACGATTGATGCTGATAGTGACtactatttaacatgatagaaataggaaacagagaaggtcggggtagcctataaatCAAGACATTCGAGAGTGCCCATCCCAGCAAGGTAAGGCCTTAAATTCTGCCTAATGGCACAGCATTTCATGAACTTCGCTGTGGGAAagttgatatgcttcagttttCTACCATTTGACTGGTTTCACATATGCCTCCAGCAAATATAAGATAAAATATCTAAAACCGGTGTCATTTATATGTAAAATTCCCTTATCCAAAGGGATgactcatttacctagctcttcccaatagctcttatcaagttATAAATTAGACAAAAATTAAGTAGATACTTTTCCCACGTTTttccttattcatggtttcctcatgcTAAAGGTGAATAgcatgcttaaattcaaggtcagaatacgcatAGAGAGGAAAGTGCATAAAAAAGCATTTACACCCCATTTACACATGCTTAACTATTGGCCCGATTCCGATTTAGGAATTTATGCCTTTCCTATGCATGCCTTTCCTACGCATGCTTTTCCTATGCATGCTTTTCTTATGCACTTTTCAGTATTTGGCATTCAGACTTATTTAGTCGTGTAAAGCGCTCTGCATGAGTGGCTACCTTGCGCACTTTGAATAAATGGCATTCaactgctgaaaaccctcccCATATGCTGGGCAACAGATTTTCTcttggagttttcattcaatggGGTTTTCCTATAGTTCTGGTCTCCAATTTTCATCTTTGCAAATTATGAGAGCACACAATTAGAATTCTGAATAAATGCATGGCTATTTATATCCTATTTCACTGTgcaatacagtaactgtcatgTTGATAAGACTTTCAGTTTGCTTCCATATGGCTGTTTTCACATAAGGACAAGTTATCTAAAACAATTACTATGtgtatttacaatccccttcCCAAAAcggattactcatttacctagctcttataaATAGATATGATCaagttgtaaattacagtgcatggagaaatggtgttatttctattgGAACAAATTAAGTAGATGCTTTTTCTACTTTGAACCGGGAGGTTTgctagaccttattcatggtttcctcacgtaaaggtggtggaattattagggaattaagtcaaggtcagaatacgacGTATCTGTAGACCCTCACCTCACGACGTATCTGTAGACACTCACGCCTCACCTTCATTTATTCGGTCTCCACCTCGAACGAATAGCGGATGAATAGCATACTATTCCCATGCTTAAATTCAAGGTTAGAATACGCATTGAGAGGAAAACGCATTTTAAAAAAGGAATAAAGTTCAATTTACACACGCTTAACTCTGGTCGGAAACTGGGCCATAGTGACTGGAAGATGAATGAGTTGGATGCTATTTCAGAAGCTGTTTTGGAGGGAATGTTTCCTGTAGTTTGCATGGTTGGCCACTAGATGTGCAAGTCATGTTTCCTAATGGTTCATGACTGACTTACCGACTGACTGAACCATATCTCTGTTTTTAGAGGTGGTGATTCAAGCTCAGTGGGTGGTGGAGTGAATTTAGTCAATTGTCTTTACAGTATGCTTTGTCTgactctttctccttctctccatttgtgtgtgtgcgagtgcatgTGATTTACTGCTGTAagtacactacaataccaaaTTGTTAGAGTAAAAAGAGCACTGtataatgtaaagtgttaccaatatTTGTATAATTGTTTACCACATTTATTTGATCAAAGGCATTAAGACATGTTGTGTTTGTGCCAGTGCAAGAAAATTAAAAACACTTTTCTCAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1990607 lncRNA upstream 9020 41212394 ~ 41215752 (+) True prkd4
TU1990596 lncRNA upstream 51453 41173034 ~ 41173319 (+) True G1738185
TU1990593 lncRNA upstream 56817 41167676 ~ 41167955 (+) True G1738182
TU1990585 lncRNA upstream 73074 41151458 ~ 41151698 (+) True G1738174
TU1990584 lncRNA upstream 73908 41150645 ~ 41150864 (+) True G1738173
TU1990697 lncRNA downstream 103357 41350490 ~ 41351424 (+) True G1738265
TU1990724 lncRNA downstream 143214 41390347 ~ 41392653 (+) False G1738291
TU1990727 lncRNA downstream 208423 41455556 ~ 41525819 (+) True G1738291
TU1990740 lncRNA downstream 226130 41473263 ~ 41480556 (+) True G1738303
TU1991325 lncRNA downstream 280536 41527669 ~ 41535345 (+) True G1738824
XM_021577806.2 mRNA upstream 8783 41203290 ~ 41215989 (+) False prkd4
XM_021577809.2 mRNA upstream 8783 41203875 ~ 41215989 (+) False prkd4
XM_021577808.2 mRNA upstream 9027 41203290 ~ 41215745 (+) False prkd4
XM_036957840.1 mRNA upstream 23651 41184269 ~ 41201121 (+) False LOC110500431
XM_036957841.1 mRNA upstream 23651 41184861 ~ 41201121 (+) False LOC110500431
XM_021577811.2 mRNA downstream 10190 41257323 ~ 41266367 (+) True LOC110500434
LOC110500843 mRNA downstream 337675 41584808 ~ 41601466 (+) True LOC110500843
XM_036956508.1 mRNA downstream 362117 41609250 ~ 41615747 (+) True LOC110500443
XM_036957845.1 mRNA downstream 395874 41643007 ~ 41672302 (+) False LOC110500439
XM_036957846.1 mRNA downstream 395874 41643007 ~ 41672302 (+) False LOC110500439
TU1990529 other upstream 195636 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 227452 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 670919 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 821087 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1161447 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 641678 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 648196 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 1037923 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 1107444 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 1254216 42501349 ~ 42502357 (+) True G1739440

Expression Profile