RNA id: TCONS_00050648


Basic Information

Item Value
RNA id TCONS_00050648
length 6604
RNA type mRNA
GC content 0.40
exon number 17
gene id XLOC_025777
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54849083 ~ 54875874 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTCATAGGTCTCATGACGAGCTCAGCCAATCACGAGGCGATATGCTACAACTTTCGCAGGGAAGCATCGCAACAACGATTTCCTTGTGTTGTGTTTTCACGAAGGAGCTGCTGCTTTTAAATCGAAAACAAACCAGACGACAAAATCCTTCCCTCGCCTCATTTACCTTGCTTTTTAGAGTTTACTGTTATTTCTGGTGTGCTTCTTTGCATCTTGTTTTATTGAGTCTCTGCTCGTGACAGATGAACTAACTGGCTAGATGCTGACTTGCTAGTCAGTTAGCCAGTGTCAAGACTGATCCAGCTGACTGAACTGAACATCATATAAACACGACTGTACCAGATTCGACTCCGAAGAGAAGAAATGTCAATTAACTACATGCCATGTTAAATTGAACAAGCAGTCGGTTCGGAAGCGTTGCTGACATTACGCAGCTACGATTAGCTGGCTAGCTGTTGTTGTACACCATTAATAACCGCTGTCGTTAGTGCTGATCGGATTGAGTTGGAGAAATGGGTTCAATTCTCAGTCGAAGAATCGCTGGTGTTGAAGACATCGACATCCAGGCCAATTCTGCATACAGATATCCTCCAAAATCAGGAAACTATTTTGCCAGCCACTTTTTCATGGGTGGAGAAAAATTTGACACTCCTCATCCCGAGGGTTACCTTTTTGGGGAAAATATGGATCTCAACTTTCTCGGCAACCGTCCAGTGCAGTTTCCCTATGTTACTCCAGCTCCGCATGAACCAGTCAAGACATTGAGAAGTCTTGTCAACATTAGAAAGGACTCATTACGATTGGTCAGGTATAAAGATGATGCTGATACTCCTACTGATGAAGGAGTAAAGCCAAGGGCCATGTATGGAGTGGAGTTCACCTTTGACTCTGATGCACGGGTGGCCATCACTCTCTACTGTCAGGCCTTTGAGGAGTTCTCCAATGGGATGGCGATATACAGCCCAAAAAGCCCTGCGCTGGTCTCTGAAACTGTATATTACAAAAGAGGGGTTAGCCAGCAGTTTACCCTGCCATCCTTCAAGATTGATTTCTCTGAATGGAAGGAAGAAGATCTCAACTTTGATTTGGACCGAGGTGTTTTTCCCATGGTGATTCAGGCTGTGGTTGATGAAGGAGACGatTGTTTTGGACATGCTCATGTACTGCTTGCAGCATTTGAAAGACATGTCGATGGCAGTTTCTCAGTGAAACCTTTGAAGCAGAAACAAATAGTGGATCGTGTTAGTTATTTGTTACAGGAGATTTATGGAATTGAGAACAAAAATAATCAGGAAACAAAGCCGTCAGATGACGAGAACAGTGACAACAGCAATGAGTGTGTGGTGTGTCTGTCAGATCTGCGGGACACTCTGATTTTGCCCTGTAGACATTTGTGTCTGTGTAACTCCTGTGCTGATACTCTACGCTACCAGGCCAACAACTGTCCCATCTGCAGACTGCCATTTCGAGCTCTTCTTCAGATCCGAGCTGTAAGAAAGAAGCCTGGAGCTCTTTCTCCTGTTTCCTTCAGTCCAGTTCTGGCTCAGAGCATGGACCATGATGAGCACTCGAGCTCAGACTCGGTTCCTCCAGGTTTCGAGCCCATCTCTCTGCTGGAGGCATTGAACGGTATGGGTGCTGTTTCTCCTGGCGTTCCCTCAGCACCTCTGTATGACGAGATCAACTTTTCTGGCAGTCTGAGTGGAGAGAGCCGGCAGCTCAGCTCACCTGATCACTCTGGAGACAGTGCAGGACAGAAGAGCAAAGTCAGCAAATCACCTGACAGcaCTCTGCGCTCTCCATCGTCACCCATTCAAGAAGAGGATGAAGAAAAGCTCTCAGAGATGTCTGATGCCCAGGCTCATATGCTGCTTTCTAGTAGTCCCGCACCCACTGAGGGCACCGCTGGGGATGATGCGCCTGATTCACTGTCTCCTGAAGAGGAGGATCACCTGAATCTGGATGAAGAGGCCATGAATGACTGCAGCAGCGAGCACAGCAGCTTTaccaaaactgaaagtgaaacgCCTAGAGATCTGTCTCTTCCTGCTCTAGGTCCTGATTCCTGCTCTATTGGTTTGGAAGAGTAACTGGGTTTTCTGACTCATCTGAGAGTCTGAGCACTCAGAGTACCTGCTGCTCCAGTCAGCCGCTCCTGGGTCCCTCAAGCCATTTGCACATGGACGATGAAGAACTGGATGTTTAACCATACAGGACCATCACCCTCTCCCAAGTCTGTGTCCAGCCCTTCCACAGTTTCCACACTGCAGTTTGATGCACTCCATTCCCAGACTCTGGCTTTAAATATGACTGACTCTAATATATTGTGTAAGCGGATGCAGCCTTGGAGATATCTTCTGGTGGTCTGACATAATTATTGTGTTTTTCTATATTAGGGCTCATTTTCATCAAGTTGCCTACTTTATTCATCCAAAAATCCGAGAATACCTTAATGTAATTCAAACCCTGCATCAATTAGGTGAAatgttcatgcttttattatGCCTACAGAGAAAGTGGATGGTCATCTATgttacttaaagggacagttcacacttaaaaaatgaaaaacctgCCATCTTACCTTTTTTCAAAACCTCAGTTGCTTTCTTTTGTAtcaacaaaacaagatatttagaaaaatgcttgaCCTGCAAAGCAATTTATTTTCCTACTCTGGATGTTGATGGGTgcaagcaaccagcattcttcaaaatatcttcttttgtgcttgacagaagaaagaaactcaaaaagctTTAAAACTATAtcagggagaataaatgatgaggtcattttcatttttaggtgaaccatccctttaataagTTTCAAGAAAAGCTctacaaattaaaatgttacatatcAATCAAGACTTCAATGTTATATGCAAGTCTTTTGAACTTTTATAAAAGATTTATGTGAGGAACTGATTAATCAAAAACTCTGAATATCTAAATAGCAGGTTAGACTAATTTCTTAAAGCCAGGGATGTCAAAATTCAGTCCTAGAGGACCGGCGTCCTGCTGAATTTAGCTCAAACTTGCGTCAGCACACGTGccagtatgtttctagtatatctCAAATTCTAGTATAACTTAAATTTACCTGCCCTTTAAACCGAGTTGAAGTGGGTTGGAGACTCTTATATCTTGCTTGTCGGATGTGAAAGCCTAGTTGTCTTCGAACTTTGTAGATTTTAATGagagtaaaactgaaataattgagTTCGGCCAATCAAATTCTTCTAGGACATCAACAGTAAATCTTGGTAAATCAAGCTTTTCTGTGAAGCCTTGGGTAAAATATCTGGGGTGTTATCTTTGATGATAGCTTGAGCTTTGATGGACAGATAAACACAGTGGTCAAAAATTCTGCTTTTTTCAGCTTCgacttttaaaaacagtcaaatctataaacattaaaaataataatacatgctTTTTTAACTTTAAGGCTGGACTACTGTCAATTCTATCCCATTTACAGTTGATACAAAGtgctgctgcaaggcttttaaccgCTACCAGAAACATGAGCACATCACACCAGTCTTGCACTCTGTGCACAATcgtgtcacttttaaaattctCTCTAAaaaactcttgttttttttttaaaaatctctaaATGACCTGGCACCTTGgactgaacatcagcctggtcggtctcttCGATCATCAAACCAGAGATCATTATGCATCCTAAGTCGATGAAGGGGTGAAATGCAGCAGCTTGACCTAGATTGTGcaatgctctgcccctctgtattagatCTATATCatctctgtttttaaatctaggttgaaagcTTACCTTTTTGATTGGTCAAAAATAGTTGATCAGTCAAAATTgtataatagtgctatataaataaaatcgaCATTGACATCTAGCTTAATGaactggttcagatgtgtttagggttggagctaaactctccaggacatcggctctccaggaccgagtgtggacacccctgctttagagcaTCACCATCCATCTtttcatacaaaaaaaatgacactACAGGGTTATGAATGACAATAAGGTCAATAAATAATGATCATTTCCTTTAGTGAGTGATAGTTTTGGATGTAATTCTCTTAAAAACGTAACTGTTTTGTTTACATCGGTGGTTTAAAGAATGTTAAACATCCGCCGATTCTTTCCATTCCACGAACAGTcgtattattgattattattatatattttaaagaggATCATTTTATGACTCATCTAAGTTAAACAgtggagttttaccattttttaatacattcagtCAATGtccaggtctggcaggagcacttttagcttagcataaatcattaaatcggattagaccattagcacatCACGCTGAAAAAGAATTGTtacgctaaaagtgctcctgccaaactCTAAGATTAAATGACTggataaaaaatgtgaaaattcaaCTGCTATAAAATGAgcccatttccaaaaaaaaaaaaaatgtggagtgTTGTTTTAAGAATTTTTGAACCAGAATGAaaataagctttatttttaagagcgTAGCCGAAGATTAAGAACACCATATCAGTGCTTGGTCATACAATGCTATTACAGAGCTTCTATCCAGAAATGTAACACTAACCAAGCCTGTTAAGGTTAATATACAaagcacatttaaataatgaataaataacctACTCATTTCAGGATATCTGTACAACTCTATAAACGATCATGTGTTCAACTAATTAGTGAAaaactacagaaatgtatatcTTTAACTGTTCCTTTGAAATGCTTTTAAATGTCCTGAACTTGTTTGTGTGTGCTGACTAAAGACCAGAAAAGCACTTATACAGTACATACAAGATCATTATATATGAGGattcaaatgtaatatttatagtgATTAAATATACTGGTGGACTTTTGTCAGTTTAATGACCAAATATTGTGTGGTCTATAACAGTGCTTTAAACGTGCTTGCTTGTTTCTGTTCTGTAAAACTTTAAggactaaaaaaaaaagccatggtGGACTCTATTTACCTCTTTGTTTGCTTATAAATATCGTAAcataattttcaaaatatttcaatgTGTGATGGAAGACTTTTTCACGTGTCGGTTCAGATGTTATTGATTCGTTTTAGCGTGAAGGCTTTGTGAATATTTGACTGGTTTGGTTGTACTTTACAGCTGGACTTTGTATTTTTGTGAAGGAGAAGAACAGCTGAATGAACAAGTCACAGGAAGCATGAAATCTCATTGTTCTCCTCAAACATGCAGATATGCAGTGTCTTGTAACATTATGCATAGAGGTTTATGTGCCTTTGAAGAACCAAGCAAGTGTTGCTGCAGCTTTTTCGTGCCCATAGCTGTGCTGTTCTTGTGTTCATTTCTGCTGTTCATCTTTAAAGCTGTAACCTTTAGCCTTGACTACATTTTTGCATTAGATGTGAGACTGATGTTCTTATTTTTAACGTCCATTTTGAAGAGCGGATCACTTTCTGTTTATATTACGTGGGTTGAAACCTATCGCTTATTATACTgaacaaatgcaaataaactttGTAATGCTGATACTTAAAAGGATTTCTTTTTGTCGTTAGTATTGTAGCTGTTAAACTGGttaattttcaagagttcacacttagctgatgattaattataaaagcttgtttggcatgctgtcccgggagagagccctgagctcatgagatcctcgagcctagggctccctcccgttgcaaggcagtaggggagtttgagctcaggtagatctcgaaaactcccctgctgtagcaagtgaatgctcttgaaattaattactaactagaagcatgtctatgctgacaatttggattgttcaattgacttaattgcatgtttttaggcggtgagaggaaaccggggaacccggggcaaacccacgtgagcacggggagaagtgcaaactccacacagaaatgtctgctagttttggtaaagcctggaaccagagacattcttgctgtgaggcgacagtgctaggcactgggccaccgtgtcacccgtctaagaaggaggagcaggggaggaaggggggactcttcaaaacgaagatagcaatggaataaaccacAGGGTATTTATGGTAGTTTAGGAGTCATTTGATTGGTCGTAGTGAattagataatgcgggtcagctgctagcaatcataagcacgtgatcctctcgaaatttgtttatacataaacttcacataaTGGGTTGTTATTCCTTAAATGTTGGATTTATCACAGTGTGAATATATGCACATCATAACTACCACAGAGCAACtgtaatatggaaaatatttcacTTTGCACTTGAAGTGTTTCATAATTCTAATCTACCTGTTGTGCAACACGTCACTAGACGACAAgaataatttaacaaatattcAAACCTATattcaatattgtttaaaaaacattattttaatttcgcAGGGCACCCAAGATGTAGGtatcattttgttttctttagtaACATTAAAGAACTCTTTTAGCTATGTGATTCGCATCTTCATACATATTCAAGGAATTTCCTTCCCTTTTTAGCATCTGAATCATTTCAATGACTGAAACGTGActtaatca

Function

GO:

id name namespace
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0043951 negative regulation of cAMP-mediated signaling biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0005769 early endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110401-3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in endosome to lysosome transport; negative regulation of signal transduction; and protein ubiquitination. Predicted to be active in early endosome; nucleus; and plasma membrane. Orthologous to human MGRN1 (mahogunin ring finger 1).

Ensembl:

ensembl_id ENSDART00000008988

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052804 lncRNA upstream 12566 54834509 ~ 54836517 (+) True XLOC_025776
TCONS_00052802 lncRNA upstream 512444 54332726 ~ 54336639 (+) False XLOC_025769
TCONS_00052803 lncRNA upstream 512444 54332747 ~ 54336639 (+) True XLOC_025769
TCONS_00052801 lncRNA upstream 545459 54289678 ~ 54303624 (+) True XLOC_025768
TCONS_00052384 lncRNA upstream 564898 54283767 ~ 54284185 (+) True XLOC_025767
TCONS_00050655 lncRNA downstream 238223 55114097 ~ 55114757 (+) False XLOC_025783
TCONS_00050657 lncRNA downstream 246788 55122662 ~ 55123322 (+) False XLOC_025784
TCONS_00052805 lncRNA downstream 510341 55386215 ~ 55387657 (+) True XLOC_025788
TCONS_00052806 lncRNA downstream 606246 55482120 ~ 55488241 (+) False XLOC_025789
TCONS_00050663 lncRNA downstream 606267 55482141 ~ 55488241 (+) False XLOC_025789
TCONS_00050646 mRNA upstream 34553 54776117 ~ 54814530 (+) False XLOC_025775
TCONS_00050647 mRNA upstream 57392 54776475 ~ 54791691 (+) True XLOC_025775
TCONS_00050645 mRNA upstream 57419 54776117 ~ 54791664 (+) False XLOC_025775
TCONS_00050643 mRNA upstream 77274 54761569 ~ 54771809 (+) False XLOC_025774
TCONS_00050644 mRNA upstream 81145 54761680 ~ 54767938 (+) True XLOC_025774
TCONS_00050650 mRNA downstream 11908 54887782 ~ 54893706 (+) True XLOC_025778
TCONS_00050651 mRNA downstream 155811 55031685 ~ 55043150 (+) True XLOC_025779
TCONS_00050652 mRNA downstream 217707 55093581 ~ 55094399 (+) True XLOC_025780
TCONS_00050653 mRNA downstream 224171 55100045 ~ 55100936 (+) True XLOC_025781
TCONS_00050654 mRNA downstream 229192 55105066 ~ 55105966 (+) True XLOC_025782
TCONS_00050635 other upstream 781444 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 2020077 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 2228908 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 4773893 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 5716606 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050662 other downstream 423169 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 607639 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 2760500 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 2950065 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 3122116 57997990 ~ 57998559 (+) False XLOC_025817

Expression Profile

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