RNA id: TCONS_00050657


Basic Information

Item Value
RNA id TCONS_00050657
length 567
lncRNA type retained_intron
GC content 0.47
exon number 2
gene id XLOC_025784
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55122662 ~ 55123439 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCACTCTTCAGCTTCTGTTTAAGACACTTAGTCTGAACATCTAAAGTCGAAAACATGGTTGTGTGGACAGACTTCGAGAAGGCCACCATTCAAGATATCTTCGCCAAGGCTGACTACGACGTCATCGGTCCTCAGGCTCTGGCAAGGTAATGAGTCTTGGAGCTTATATTAACTTATATTTATAACATTACATAAGGCAGGAGACTGGTTTCGagacagctgctctaataaaaTTTGTTTTCATCAGGTGTCTTATCGTGTACCCCTGGACCCAGCGGTACTTCGCCAAGTTTGGAAACCTCTACAATGCCGCTGCCATCCTGGGAAACCCAATGGTTGCTGCCCACGGTAAAACTGTGCTCAAGGGTCTGGAGCTGGCTGTAAAGAACATGGACAACATCAAGGCCACCTATGCTGATTTAAGTGTGCTGCACTCCGAGAAGCTCCACGTAGATCCCGACAACTTCAGGCTTTTGGCTGATTGCTTGACCATCGTTGTTGCTGCTCAGATGGGTGCTGGATTCACACCTGAAGTTCAGGCCGCTTTCCAGAAATTCATCGCTG

Function

GO:

id name namespace
GO:0016999 antibiotic metabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0048468 cell development biological_process
GO:0042743 hydrogen peroxide metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0042744 hydrogen peroxide catabolic process biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0051187 obsolete cofactor catabolic process biological_process
GO:0015893 drug transport biological_process
GO:0017144 drug metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0015669 gas transport biological_process
GO:0015671 oxygen transport biological_process
GO:0032502 developmental process biological_process
GO:0048066 developmental pigmentation biological_process
GO:0072593 reactive oxygen species metabolic process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0031838 haptoglobin-hemoglobin complex cellular_component
GO:0005833 hemoglobin complex cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor molecular_function
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0016209 antioxidant activity molecular_function
GO:0140104 molecular carrier activity molecular_function
GO:0043177 organic acid binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0031720 haptoglobin binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090501-3 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex.

Ensembl:

ensembl_id ENSDART00000155050

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050655 lncRNA upstream 7905 55114097 ~ 55114757 (+) False XLOC_025783
TCONS_00052804 lncRNA upstream 286145 54834509 ~ 54836517 (+) True XLOC_025776
TCONS_00052802 lncRNA upstream 786023 54332726 ~ 54336639 (+) False XLOC_025769
TCONS_00052803 lncRNA upstream 786023 54332747 ~ 54336639 (+) True XLOC_025769
TCONS_00052801 lncRNA upstream 819038 54289678 ~ 54303624 (+) True XLOC_025768
TCONS_00052805 lncRNA downstream 262893 55386215 ~ 55387657 (+) True XLOC_025788
TCONS_00052806 lncRNA downstream 358798 55482120 ~ 55488241 (+) False XLOC_025789
TCONS_00050663 lncRNA downstream 358819 55482141 ~ 55488241 (+) False XLOC_025789
TCONS_00052807 lncRNA downstream 358856 55482178 ~ 55488241 (+) False XLOC_025789
TCONS_00052808 lncRNA downstream 523551 55646873 ~ 55654264 (+) True XLOC_025790
TCONS_00050656 mRNA upstream 7788 55114097 ~ 55114874 (+) True XLOC_025783
TCONS_00050654 mRNA upstream 16696 55105066 ~ 55105966 (+) True XLOC_025782
TCONS_00050653 mRNA upstream 21726 55100045 ~ 55100936 (+) True XLOC_025781
TCONS_00050652 mRNA upstream 28263 55093581 ~ 55094399 (+) True XLOC_025780
TCONS_00050651 mRNA upstream 79512 55031685 ~ 55043150 (+) True XLOC_025779
TCONS_00050659 mRNA downstream 7967 55131289 ~ 55132052 (+) True XLOC_025785
TCONS_00050660 mRNA downstream 164878 55288200 ~ 55290630 (+) False XLOC_025786
TCONS_00050661 mRNA downstream 164880 55288202 ~ 55290637 (+) True XLOC_025786
TCONS_00050667 mRNA downstream 1039954 56163276 ~ 56342119 (+) False XLOC_025792
TCONS_00050666 mRNA downstream 1039954 56163276 ~ 56342119 (+) False XLOC_025792
TCONS_00050635 other upstream 1055023 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 2293656 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 2502487 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 5047472 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 5990185 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050662 other downstream 175721 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 360191 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 2513052 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 2702617 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 2874668 57997990 ~ 57998559 (+) False XLOC_025817

Expression Profile

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