RNA id: XM_036956508.1


Basic Information

Item Value
RNA id XM_036956508.1
length 2490
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110500443
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41609250 ~ 41615747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacaaaatatagtACATGAACAATAGCCCTGATACACATCACATATACAGATACATGTAAATACATCCATAAACAACACAATAACAAACATATCTATGTAGACAGTAGCTAAAAGTATTACTCATAACAGAACcatgtgaggttgtgtgtgtgtgtgcgtttgtgtgttagTGAGAATAATCTCTAGAATATTACTTTGCTTTTCTGTGTACGGTGAAGTGGTGTGATCTAAGCATGAAGTGGTGTGATCTAAGCAGACTGTCATCATATAGGAAGTAGAGGAGTTTGTTAGAAGGACTGTAGTTGTAGAGAAAGTCACTTGTCTGTGGGGACAGAATGGAGCACACCTTGTTCTGTTTGCTACTATTGCTGAGTACACACATCTACTCTGGACACTCTGAAGACGATGATGGACAGGCAAAGGCTGTTCTGACCAAACACCCCAAACCCTCCCAGATATTCAGTGGAGAATCTGTCACTCTCAGATGTACCATACAGAGGGGAAAAGTCACTGACTGGAAATACACATGGAGCAAGGATGGTGTAGACTTACCCAGTCGGAAGCATAAATATGAGATCAGTGGGGATAATATTTCAAACAGTGGTGACTACAGGTGTCTGGGTAAACATATTGGTAATGGGACGTATTCTGAGTGGAGTGATGTAGTCAGACTGACAGTGACAGCTCTGCCTACAGCCTCAGTGAAGATGGTCACTACCCAGGAGACACTGTATTCTGGAGACACAGTCAAGCTGCAGTGTGTCATATCAAACTACACAGACTGGACGTACCACTGGTTAATAAATAAAGAACGGCTTTCTAGTCAGACCAGTAAAaccaccaccatctctctctctgatcaggCTGGTCAGTACCAGTGTCAGGGGACAAGGACAAGACGGCCCCAAAATTCATATCTCAGCTCATCTCTCCACATTAGTGTCACTACTCTTCCTGAAACTACACTGAGCGTGTATCCAAACCCTGCATACACTGGAAAGACAGTAACTCTGACGTGTTCAGTGGGGTCTGACAGTGGCTGGAGGTATATATGGTACAAAGACAACACTAAGAAAGTAGTGACCTTGTCTGGCAGACACACTACAACAGGAGCCACCTTCACCATCAGTAGTGCTGCTGAGTCTGACCAGGGTCTCTACTGGTGTCAGGGAGAGATCCAGTCCAGATCCATATCATCAATCATCAGCGATCCTGTCACTATCACTGTGAAAgAGAGACCTGCGGCTGTTCTGACCCTCCAACTCAACTGGCCCCAGATTTTCAGTGGAGAGACTGTCACTCTCAGATGTGACATACAGGGGGGAGAAAAGATTGAGTATGCTTTTTATAACAGTGGGATGTCGGTCTACACCAAAACAGAGCCTGAGTACAGAATCAGTCCTGCAAAGAATGGTCTATATACCTGTGAAGGTCTTCAGAAAAGAAATGGCTTAAAACACTCCCAGACAAGTAATGCTATACAATTGACCGTGTTAGATCAACCCCAAGCTGTCCTAAGTGTCTCTCCTCAGTGGCTGAACCCTGGAGACTCAGTTACTCTGAGCTGTGGGGTTAAAGAGTCATCTACAGGCTGGAGGTTCTTCTGGTACCAAACTGTTCCCTACACAGCTGGGTTACCCTCCCTATCAGAAAGGTCCTATTCTGTAGAGCCTCTATCTGGCAGTGGGACTAGTGAAGACTCCTACACTCTGATCCCTGCTGGTCCTAGTCACACAGGAGGATATGTGTgtagagcagggagaggagacccagtcTATGACACAATCTACAGTGAACCTCAGTTTTTCTGGTCAGGAGATCCGCAAACTTCAGTGTCTCTCAAAATAAGACCTAACAGAAATCAACACTTTACATCAAAGTCTCTCTCACTAAGCTGTGGGGAGAAGGGGAACTCTACTGGATGGAGActgaagagatacagagagaaagcagtggagtCAGGATGTGGCTCTAACTGGGGATCAATAGCAGGGTCCACATGTACCATCAGATTCACACGTAAAAAGGACAGTGGAGTTTACTGGTGTGAGTCTGGATCAGGAGAGTACAGTAATGCTGTCAACATCACAGTGGCTGATGGCCCTCTGATCCTGGAGAGCCCTGCCTATCCCATAACTGAGGGAGACTCTGTGACTCTACGCTGTACAAATAGAAATCAGGAAACAAAACCGAACCCCAAGGTTGATTTCTACAAAGATGGAGTACTCATCAGGAATGAGACCACAGGAGAAATGACCATCCCTGCAGTGTCCAAGTCAGATGAAGGCTCCTATAAGTGTACATCTATTAAAGTAATATCACCAGAGAgctgggtgacagtgagagGCGTAACTCCTGGACCCTCTACATCAGTCCTAGTAGGAGTGGTTGTGGGCCTGGTTGTTGCTGGTGTTCTACTGGCCATTCTCCTGGTACTGCTGTGTCGATATAAAAAAGCCAAAAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991332 lncRNA upstream 68108 41540893 ~ 41541142 (+) True G1738831
TU1991330 lncRNA upstream 70556 41538492 ~ 41538694 (+) True G1738829
TU1991325 lncRNA upstream 73905 41527669 ~ 41535345 (+) True G1738824
TU1990727 lncRNA upstream 83431 41455556 ~ 41525819 (+) True G1738291
TU1991416 lncRNA downstream 104656 41720403 ~ 41720637 (+) True G1738892
TU1991417 lncRNA downstream 105933 41721680 ~ 41722008 (+) True G1738893
TU1991453 lncRNA downstream 153036 41768783 ~ 41769071 (+) True G1738924
TU1991454 lncRNA downstream 153754 41769501 ~ 41769847 (+) True G1738925
TU1991612 lncRNA downstream 163080 41778827 ~ 41787548 (+) False G1739070
LOC110500843 mRNA upstream 7784 41584808 ~ 41601466 (+) True LOC110500843
XM_021577811.2 mRNA upstream 342883 41257323 ~ 41266367 (+) True LOC110500434
XM_036957843.1 mRNA upstream 362117 41224772 ~ 41247133 (+) True LOC110500837
XM_021577806.2 mRNA upstream 393261 41203290 ~ 41215989 (+) False prkd4
XM_021577809.2 mRNA upstream 393261 41203875 ~ 41215989 (+) False prkd4
XM_036957845.1 mRNA downstream 27260 41643007 ~ 41672302 (+) False LOC110500439
XM_036957846.1 mRNA downstream 27260 41643007 ~ 41672302 (+) False LOC110500439
XM_036957848.1 mRNA downstream 27260 41643007 ~ 41672302 (+) False LOC110500439
XM_036957853.1 mRNA downstream 27260 41643007 ~ 41672302 (+) False LOC110500439
XM_036957854.1 mRNA downstream 27260 41643007 ~ 41672302 (+) False LOC110500439
TU1990529 other upstream 580114 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 611930 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1055397 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 1205565 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1545925 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 273064 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 279582 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 669309 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 738830 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 885602 42501349 ~ 42502357 (+) True G1739440

Expression Profile