RNA id: XM_036957853.1


Basic Information

Item Value
RNA id XM_036957853.1
length 6941
RNA type mRNA
GC content 0.52
exon number 41
gene id LOC110500439
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41643007 ~ 41672302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGTGGCGTCTCTTTTGTTTGTCTTGCTCTTTGGAAATGGTGTGATTTCCATACACAACCACCACTTTATGGGAGAGAAGGACTTGCTACTGGATTTAGGTGGGTGGAAAACAACATAATATGGATCATCGGCCTGAAGGCTACAGCTAAATACATGAACATATTCATGCAATCAGAAATGTGGATTAATCGAGGAATGCGAGGGAGTATGGGACAATGGAATCTCACCCTATGGAATTCAGCAGTTTGATCACATGAAGCGAGTTGTTTGGGAAGGAGAGACGTCGCCTGCATCTACCTATAAAGCTAAGCCGAATCGAATGGACTGTATTTTGAGAGCAAGACATCCAAGTTGATTGTACAAGTAATAGGATACTGGATATATCTTTACATTCCAGAGGGGTAACTGGCCTCTGTCTGCATTTCAGATGCTAGCTAGCCAATGCATTCGAGTGGCAGACTAGTTTAGCTAGTTCTCCATTGCTGCTCGCCATTGCTCCCTGTCGCGTCGGCGTCATAGCCGATGAGAACGCTCTTGTGTCCAATCACAGTTTTCACGTGATGTCGCGGATGGCTTTTGGCCTCTATCGGAATTAGCTTGTTAGTAGCCTGCCAGCCATTATTTGCTTATCACAACAAAATATTATCTACAACAGTGAGTGTTGCAGAAAGAGACCCCATTTGTTGGCAAAAACAAGTATTTAATTTGCATCAAAACAATATTTAGTTAGCTATATAGCAATAATAGCCATCGTTAtggctaacgttaactagttagcaagctagccaacttgaTGTAAAGGGCAAGCTATCTACCCAGCTAACATAGCGCGGTTCTTAACGTTATGTAATGCTGGATATCAATAACATCAGCCAACTAGTCGCTTGTCGTGGATATAATTGTTCTTTCAATTTTGGGAAAGTTTATCGGGGGCATTTACTTGCAACGTTCACTGACCagtcaacgttagctagcttgttaGGGAGCTAGCCCTTACATCGTAGTTCGCTTTGCATTACTAGATATTGTAGCATTAAACAGGCTCCAGTGTACAGCTACGAGTTAGTGTTGCAGTGGAAAGTCCAGTCAGGTCAGAAGGCATCCTGTTTACAGCGGATATCCACCTCATAGTCAGTTTAGGAACACTTAGGTAATCATGCTGCACCAATGCATGCCATTCGAAGATACTTTTTGTGCATTTTAAATGTTGCACGAACTCGCATTTTAGAACAGTTCATAGCACCACATCGAACATTGGCCAAGTTTTAACACAGATAAAGGGACGTCTAGTCGAACATCATCACGTGCACGGAGATCATGTACTGTTCTCCCAAGAGCCACACCAGTAAACTAGCCTCAAGGACTCTGTAACTAAATTTAGCTCGCAAGGGATGGAAACCAATTTACTGAGGATAATGCGAGTACAGTTGTCTAGCTGACTTTACTTGGATTGGAAGTATCAACATAATAAGCTGGAGGAAATCTTTATATATACTCATATTACTTAGATTTGAATGAGTTTAAGCTAATGTTGGGATACTAGTGGAAATGCATATGCATTGTAATTAATTAGAATGTTTACTAGCTATTATCTCAGAAAACAAATACAATAGGACAGGAGCTGTTGACAAACAGGCATTACTCTGTCACTAAGACATTTGATGACAACGTTATTGTGCAAGCTATCACTTCCTGGTAGGACTGGAAACACAACaggcctttaaaaaaatatactctTTACCTTTGTATTGATTTGCTTGTTGTTGGTATTGCTATGTAGTTACGCTTTGTCTTAAGACTAAATTAAAATAACACTGTAGATATTGCACAGTCAGTGGTGCCTGAATTTCATGTATTTTGCTTTGAGATAGCACACAATTTAAAGTCCCCCACCAGCTATTTCTTCTTGACTTTTCCTGTCACGCTAGATTGTTCTAACACTGTTTCAATTCGCCGGGAGCGCTGTTTCAACGGTCTACTGTAAGATACTTGAAGATTGCCTATGACAAAATGAGGAATATGCACCGAGCGCTCTCTGAAAGGAATAAGCTCCCCACTAGCTGACGTGAGGAGTTGTAACTTTTGGACATAGCTGGCAGACAGCAGCAGCACTGTGGAACTCTGTACAAAGAAACTTGAAGAAAAAAAGGAGATGGTCACCCTGCTGTGACATCAttggactggaggagagaggacacggACACTCTCGAGCCGTCTGCAGCCATGAGTCTCCGCCCCCCCACCTCAACACTGGACAGCCCTTTTGCTGCTTGGCTCAGCAGCCTGACGATAGGAGACTCGGAGCGCAAGACCTCCAGCAGCCAGCAGAGGGAGCCTCTGGCTGACTTCCCCACTGAGAGCACAGgtcaAGGTCTGGTTCAGAGATGTGTGGTTGTACAGAAGGACCAGCTAGGGTTCGGCTTCACTGTGTGTGGCGAGAGGATCAAGCTGGTGCAGAATGTTCGACCAGGTGGCGCAGCGGTCAAGGCAGGGGTCCACGAGGGAGACAGAATCATAAAGgtcaatGGCTCGCTGGTGTCGTCCATGTCTCATCAGGAAGTGGTGAAGCTCATCAAGTCTGGGACATATGTTGCTCTGACTCTTCAAGGGCCGCCCCCTTCAGCAGCTGCCCTCCCCCTACATCCCCTCCCCACTGACCTCTTACCCAATCAGCGGACGTCACTGGGAGGAGAAGCCCcgcctccaccacctccacccctctcccccgGACTGACCAGCAACCCCTCCCAAAGGATCACCAAACCACTGCAGAACCTAGACGTACAGAAACACGCCACTCAGATCCTCAGGAACATGCTGGAACAGGGAGAGGCTGAGCTTCAGGACTTGATGGGGGAACTGTTACTGAACCCCTCCCCATCCCTGGAGGAGCGAATTGAAAGTGCCAAGCGGCGGGCCCAACAAGTCAGGGTTAAAATCCAGCAAGATCTGgATGGAACTCGATTGGAATCTGTGACCAGCTATGTAGTAGCAGGAGAAGGTCGGTTGTCGGGGGATTCAAGTGAAGGAGACTTTGAGGCCTGTGAGAgcccccactcctccccctccacctcctccttcagGACCCCCCTCTACCGGAGACagggctctgacacacacaccttctccgaCTCGGCTGGGAAGGCTCAGATCATTGgcccagaggaagaggaggaagaggacgacAGCTATCCACTCAATGAGaTGGACGGCCCATTTCAGGACATAGAACTTCTCAAGTCGCGACCGGCCCACATGACCGTGTTCATGAGATACCTCTTCAGCCAGCTACTGGATCCCAACCCGCTGCTGTTCTACCTATCGGTGGAGGTCTATCTGGGCTCCAGCCCTAAAGACGCCCGTGCCCTCGCCCCACAGATCTGCTCCCACTTCCTGGACCCTGATGCTCCGTTGAAAATCAGAGTACGAGAAGAATACCTGTCTGATATAGAGAGTCGACTCCATGCCCAGGAGGACATCAGAGGACCTCTTTCTGAGCTCCAACAGCAGGTGCTGCCTGACATTCAGGACCAAATACAGGATTACAGgagtaAGCAGATGATGGGTCTGGGTTCTCTGTTTGGAGAGGGAGACCTGCAGCAGCTGGATGGAGACCCAGCCAAGGAGAGGCTAGTGGTGGACAGACAGGTCACTGCTCTCTGGGAAATACTCTCGAAGCACGAAGAGGAGAGCAGTTCTCGTCTAGCCTCTGCGGTGCTGCTGTACCTCCGTCACTCAGGCATAAAGCTGAGGGACTCCAGGGTGTTCCCAGGCCTCAGCACTGAGAAGGAGAAGTGGCTCTCCTTCTTTCCCAAGACCAAGAAGCTGAGCAGTTcaaagaaagagaaggatggagaggacaggaagagaaacCCCATCCTGAAGTATATCGGCAAGCCCAGGAGCACCTCTCAGtccaCCTTCCATGTCCCCTTGTCTCCCACTGAAGtgcGCCCGGGCAGTGTGAGGAACATCATCCAGCAGTTTGAGAACCACACAGAGATCCCCGGGGAAGAGGGGGCTGAGGGAGACCCTCCGAGACTGTCCTCCAGCAGCCTGGGAGAGGACAGCATGGACAgccccacGGTGTCGATGCGTCTGGCTCGTAGTGAGTCTCTGAAGGCGCAGGGGGAGGGGCGTCGGCGGGGCGGGTCCTCGGGGGTGGAGACAGTCCCTCGGTCCCGTAGCGACGTGGACATGGAGGACTGTGGAGAGGAGAGTGAAGGGCCGGGCCTGAGACCCTTAAACCACAGCACCTCCTCTGCCTCCAGTAGCTCAGCACGATCCTGCGAGAACCCCACCCCTCCGTACACCCCTCGGTCTTCCAGAAGAAAGAGTGTGGAGTTCCCAGTGGCCTTGCTCCCTGACGCCCCAGCCCTAGAGGAGGACGTGGTGGACAGTCACAACTGGCAGGAGACGGTGGCCCCGCAGGTCCTGGCTACTCTCTGTCCCCGAGAGGTGGACAGACAGGCTGTCATCTAcgAGTTGCTGACGACGGAGGCGTCTCACCTGCGTACACTCAGGGTGTTGGATCAGGTGTTCTTCCAGAAGATGAGGTGTGTTCTGAGCTCTGAAGAGCTGGCCTGCATCTTCCCCAACCTGCCTCAGGTCTACGAGCTCCACGcgaGTCTGTGCGAAGCCATGAAGAAGAGACGAGAATCTCCCATCGTTCAGGGCATCGGCGACATCATGCTGGCCAGGTTTGAGGGCGTGGCGGGGGAGGAGTTTCAGGAGCAGGCGTCCCACCTGTGCAGTCAGCAGTCTCAGGCCCTGGAGCTCATCAAGAACAAGCAGCGCAAAGACCCCCGCTTCGCACACATCATCCAGGAGTGTGAGGCCAGTCCTCACTGTAGGAGGCTGCAGCTGAAGGACCTGCTGGTGTCTGAGACGCAGAGACTCACCAAGTACCCTCTGCTACTGGACAACATCCTCAAACACACAGAGGCCGGTTCCAcagacctccctcctctccaacaGGCTCAAGCCTGTTGCCGGGGGATATTGCAGGCCGTCAACGAGGTTGTCAGGGAGACGGAACACCGGCAGCGGCTCAACCAATACCAGCGCAGGTTGGACCCCACGCCACAGTTCAAGagtCTGGACCTGACCAGTAAGAGAATGATCCATGAGGGTCCTCTCACCTGGAAAGTCAGTAAAGACAAAACCTTGGAGATCCAGGCTCTGCTGTTGTCAGACCTTCTGGTGTTGCTCCAGAGAGGTCCAGACGACCGGCTGCTGCTGCGCTGCCCGTCCCGCTTTCTGGGGGGGGGAGGTGGGGGTAGCGGGGATACCAAGGCCTCCTTCAGCCCCGTGGTCCAGCTAGACTCACTGCTGGTGCGCTCTGTGGCCACAGATAACAAGGCCCTGTACGTCATTAGCACAACAGAGCAGCAGATATACGAGCTGGTAGCAGGGACGTCCTCAGAGAAAAACATCTGGAAGGACCAACTTGAAAAGACCATCTCATTGGCTGCTGGCTCCTCACCTTCGACCAATAACAGATCCACACCTATTTTctCCCCGAGTCTTGGTAATGCTTCCCCTGTCTCAACTGGCAGCCATGTCTACCAATCAGACGACTCGATGACGGAGCAGGCAGTTTCAATGGGGACAAACTCTCCTAACAATGAGGACAATGAGCTCACGCCCACCACACCAACAGCGCAATCAGGGGCTTTCCTCCACAGTGAGGGACGGGACTACGTCAAGAAGCAGATTGGAGTGGCTGAGGCAGCTCTTGAAGACGtGGAGATACTAAAGCGGCTGATTTTCCACAACTTTGAGGAAGTTGGGTGGAGTCACGACTCGGACGGAACGCCCACAAACGAGACAGCCAATGAGAGGAGCCCGCTCAATGACGGACAGAGACTGGCATCCTCTGAGACTCTTTTCAGTGCCAGTCCCAGCCAATTGGAGGCTGAGCATTCCGAAGCCCCGCCCTCGGAGGTGGGGTCCCCCAGTGTACATGTTGTGAGGAAAGGAAACGTGTTCTACCTGGTGATGCCTACAGAGCAGGGAGACGGACTGCTGGATGAGAGTCACACAGATGAGGTCATTGATCCCCCCACCCTGACCTCCACCGAACTTCCTGATCTGGACCAGGAAGTGATGTCATCAAACATTAAGCATCATGAGGAAGAAGGGCAGGTCTCTTCCACCCTGTCTGCTGGCAACCAATTGGAGCCAGGAAATCTGAGGCGGGAGGGAGGGCTTGGCCAATCACAAAAGGTCCTCCAGAGCTATGTGATCAAACACGTGGATGAGATTTTCCACACAATCGAGGAGCTGATGAGCAAGCTGCACCAGCTGAGGGACATCGAGACAGCTCATCACCAGCTGCTGAAAACACTAAGAGAGCCGCCTGTCAATCAGGAGTCGGATGATCTCCCTCGCAACCAGGAAACCGTCGTCAGGACGCCGTCTCTGGACCGGGACCCAGGGGATAGTGAGTTCAGCGGTCAAGGGTCATTCCCACCATGTGTTGAAAGATATGAGCCAGCTAAGCCTGAGATCCTCTCCACTGGATTCTaaagatgttatctcaatgaggaATTCTTAAGACTCATTCACCCCTGCTCTGCCGtagacacgcacatacacactgatggactGGGACCCCAGCCTTTACCCCCTACCCCACGTCTCACACCCCTAACCCTCAGCCCAATCCTAGCATACACTGCTCGTAGGAGCAGGATCCAGAAAGTACTGTGATGTCTTTGGTGTTGCCCTGGGAGACCAGGAAGTGATGCAGGACTGATGGCCCCGGCCCCCTGACACCGAAGGATTTGCCCCCAACACGGGTTCAGGGTGAACTCTGACCTCTGTGGAGCCAGAGGGAGTCCAGGGACGAGAGAATGGACAGATGAAGGACAAAAAAAGGAAGAGACTGAAAAGTAGAGAACAAGTGATGGAAATGTGTGAAGAAGCAAATAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991332 lncRNA upstream 101865 41540893 ~ 41541142 (+) True G1738831
TU1991330 lncRNA upstream 104313 41538492 ~ 41538694 (+) True G1738829
TU1991325 lncRNA upstream 107662 41527669 ~ 41535345 (+) True G1738824
TU1990727 lncRNA upstream 117188 41455556 ~ 41525819 (+) True G1738291
TU1991416 lncRNA downstream 48101 41720403 ~ 41720637 (+) True G1738892
TU1991417 lncRNA downstream 49378 41721680 ~ 41722008 (+) True G1738893
TU1991453 lncRNA downstream 96481 41768783 ~ 41769071 (+) True G1738924
TU1991454 lncRNA downstream 97199 41769501 ~ 41769847 (+) True G1738925
TU1991612 lncRNA downstream 106525 41778827 ~ 41787548 (+) False G1739070
XM_036956508.1 mRNA upstream 27260 41609250 ~ 41615747 (+) True LOC110500443
LOC110500843 mRNA upstream 41541 41584808 ~ 41601466 (+) True LOC110500843
XM_021577811.2 mRNA upstream 376640 41257323 ~ 41266367 (+) True LOC110500434
XM_036957843.1 mRNA upstream 395874 41224772 ~ 41247133 (+) True LOC110500837
XM_021577809.2 mRNA upstream 427018 41203875 ~ 41215989 (+) False prkd4
XM_036957856.1 mRNA downstream 3944 41676246 ~ 41688377 (+) False LOC110500440
XM_036957855.1 mRNA downstream 4195 41676497 ~ 41688377 (+) True LOC110500440
XM_021577819.2 mRNA downstream 16143 41688445 ~ 41693821 (+) False LOC110500441
XM_021577820.2 mRNA downstream 16143 41688445 ~ 41693821 (+) False LOC110500441
XR_005038605.1 mRNA downstream 16145 41688447 ~ 41693184 (+) False LOC110500441
TU1990529 other upstream 613871 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 645687 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1089154 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 1239322 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1579682 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 216509 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 223027 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 612754 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 682275 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 829047 42501349 ~ 42502357 (+) True G1739440

Expression Profile