RNA id: TCONS_00050659


Basic Information

Item Value
RNA id TCONS_00050659
length 582
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_025785
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55131289 ~ 55132052 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCACTCTTTAGCTTCTGTTTAAGACACTTAGTCTGAACATCTAAAGTCGAAAACATGGTTGTGTGGACAGACTTCGAGAAGGCCACCATTCAAGATATCTTCGCCAAGGCTGACTACGATGTCATTGGTCCTCAGGCTCTGGCAAGGTGTCTCATCGTGTACCCCTGGACCCAGCGGTACTTCGCCAAGTTTGGAAACCTCTACAATGCCGCTGCCATCCTGGGAAACCCAATGGTTGCTGCCCACGGTAAAACTGTGCTCAAAGGTCTGGAGCTGGCAGTGAAGAACATGGACAACATCAAGGCCACCTATGCTGATTTGAGTGTGCTGCACTCCGAGAAGCTCCACGTAGATCCCGACAACTTCAGGCTTTTGGCTGATTGCTTGACCATCGTTGTTGCTGCTCAGATGGGTGCTGGATTCACACCTGAAGTTCAGGCCGCTTTCCAGAAATTCATCGCTGTCGCTGTGTCCGCTCTGGGAAGACAGTACCACTAAATACAAACACAGAGAGATTATAATGTTTCCACTAAAGAATGTGCTATTCTGAGTTGAAGCAAATAAATATTTCACTGTTCA

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0019825 oxygen binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-128 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to act upstream of or within oxygen transport. Predicted to be part of hemoglobin complex. Human ortholog(s) of this gene implicated in sickle cell anemia. Orthologous to human HBE1 (hemoglobin subunit epsilon 1).

Ensembl:

ensembl_id ENSDART00000111585

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050657 lncRNA upstream 7967 55122662 ~ 55123322 (+) False XLOC_025784
TCONS_00050655 lncRNA upstream 16532 55114097 ~ 55114757 (+) False XLOC_025783
TCONS_00052804 lncRNA upstream 294772 54834509 ~ 54836517 (+) True XLOC_025776
TCONS_00052802 lncRNA upstream 794650 54332726 ~ 54336639 (+) False XLOC_025769
TCONS_00052803 lncRNA upstream 794650 54332747 ~ 54336639 (+) True XLOC_025769
TCONS_00052805 lncRNA downstream 254163 55386215 ~ 55387657 (+) True XLOC_025788
TCONS_00052806 lncRNA downstream 350068 55482120 ~ 55488241 (+) False XLOC_025789
TCONS_00050663 lncRNA downstream 350089 55482141 ~ 55488241 (+) False XLOC_025789
TCONS_00052807 lncRNA downstream 350126 55482178 ~ 55488241 (+) False XLOC_025789
TCONS_00052808 lncRNA downstream 514821 55646873 ~ 55654264 (+) True XLOC_025790
TCONS_00050658 mRNA upstream 7850 55122662 ~ 55123439 (+) True XLOC_025784
TCONS_00050656 mRNA upstream 16415 55114097 ~ 55114874 (+) True XLOC_025783
TCONS_00050654 mRNA upstream 25323 55105066 ~ 55105966 (+) True XLOC_025782
TCONS_00050653 mRNA upstream 30353 55100045 ~ 55100936 (+) True XLOC_025781
TCONS_00050652 mRNA upstream 36890 55093581 ~ 55094399 (+) True XLOC_025780
TCONS_00050660 mRNA downstream 156148 55288200 ~ 55290630 (+) False XLOC_025786
TCONS_00050661 mRNA downstream 156150 55288202 ~ 55290637 (+) True XLOC_025786
TCONS_00050667 mRNA downstream 1031224 56163276 ~ 56342119 (+) False XLOC_025792
TCONS_00050666 mRNA downstream 1031224 56163276 ~ 56342119 (+) False XLOC_025792
TCONS_00050668 mRNA downstream 1144294 56276346 ~ 56284122 (+) True XLOC_025792
TCONS_00050635 other upstream 1063650 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 2302283 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 2511114 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 5056099 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 5998812 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050662 other downstream 166991 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 351461 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 2504322 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 2693887 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 2865938 57997990 ~ 57998559 (+) False XLOC_025817

Expression Profile

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