RNA id: XM_036957855.1


Basic Information

Item Value
RNA id XM_036957855.1
length 4005
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110500440
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41676246 ~ 41688377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGAGTGGAGGCGGAGCACCGTTGGGGACTTTGGCGAGTGGAGGGAGGCCATTGATTTTTAGGGTTTTAGAGTACTTTTGAACGGAGGAAAGACGAATCTGGATCTTAGTTATCCAGAAAGACTGACTGGGTAACCGTTTCCATACGCGGAAACAGAAACCAATCGGGAAACTGTGGTTGAATATTCCAAACCGCGAGGGACCGTGTAACGCAGTTTAGCCCTTTTGGAAAGGGGCGAGCAATTGTCCCAAACCCGGCGACGTGTTCTGTCGTTACAAGGGACCACAGAACAAGAGCGCAAGAAATTTGAGCTCCTAAGAACTGAAAATTTTGAATTTATATCAGCTGCCCGATAAAGCCTACACTTGGATTATCTTTATTGATTGTATTATGTGATTTAACGGGATACAAAAGCATTGCGTCTCTGTGGAGCGTTGCCTCGCGCACCCCTCTCGGTGATGAATGACTATTCACACGCGCAGCGGGGCTTCAAGCAAAGAACAGATGCAGAAACCGAGAATGGATGCGGCTCATGGCTTTTGTATAGCCTGGATGATTTTCAGTTGAATAAATTATATTGTATATGAAGAGGAATCAAGTTACAAACCTTTCCTTCCTGAATGATGTATTTGGAAAAGAAACCTAATTAGGATACATCTCCGCCGCCTGATTTGAGTCACTGTTTAGGGTTTTCTTTGTGTCGAGATTTTTAGGCTACGATTCACGTTCACCCATTTGGGTATCACATTTTGAAAAGAAAGGTCTGTCCATCCCACCCCTTCTTCTCCGGCCTCCAAGATAGATTCCTTCAGGAGTAAGGTTGAGCTCCTCCGCCTGCCTCTGGCCCTCTCATCCAAGTCCATCAGCCACCGCAAGAGTCAGCTGGGCGGAGCCGGGCAGCACGGCACGGGGGGAGGAGGTGCCCACAGGGGCAAACCCCGCCCACCGGCCTCTGACATGGACAACGAGTCGCAGTACTCGGGCTACTCCTACAAGTCCTCACACTCCCGCAACTCTAGGAAGCACAGGGATAGGCGGGACAGGCACCGCTCCAAGAGCAGGGACGGCAGTAGTCGTGGAGACAAGTCGGTCACCATCCATGCCCCTGGAGAGCCTCTACTGGACACCGAGTCCACCCGCGGAGACGATCGGGATGATAACTGGGGTGAGACAACCACCGTGCAGACTGGCACGTCAGAACACAGCGTCTCCAATGAGGACCTGACGCGCGTCTCCAAGGAGCTCGAGGAGTCCTCCCCGCTGGAATGCCGGCGTTTCTTGGGCCCAGGATTGGGTGCCATCCTTGGCCTCTTCGCCCTGGTCACCCCCCTGGCTTTCCTGGCTCTTCCGCAGCTGCTGTGGCGCGAGACCCTGGAGCCCTGCGGCACGCCCTGCGAGGGTCTCTACGTCTCCCTGGCCTTTAAGCTCCTGGTCCTCCTCATCTccacctgggctctgttcctgcgCCCGCCGCGCGCTACCTTGCCTCGCTTCTACGTCTTCCGCTGCCTGCTGCTGGCGCTCGTCTTCCTGTTCGTGGCGTCCTACTGGCTGTTCTACGGCGTGCGCGTGCTGGAGCCCCGGGAGAGGGACTACAGGGGCATCGTGGGGTACGCGGCGTCGCTGGTGGACGCGCTGCTCTTCATCCAGTACCTGGCCCTGGTGTTGCTGGAGGTCAGACACCTGCAGCCTGCCTTCTGCCTCAAGGTGGTGCGCACAACTGACGGGGAAAGTCGCTTCTACAACGTGGGACATCTCAGTATTCAGAGGGCAGCAGTGTGGGTGCTGGACCGGTACTACAGTGATTTCCCAGTCTACAACCCTGCCCTCCTCAACCTGCCCAAGTCCATCCTCTCTAAGAAGAGTTCTGGCTTCAAAGTCTACACTCTGGGTGAAGAGAACAACACTAACAACTCTACGGGTCAGTCCAGAGCGATGATCGCTGCGGCCGCCCGCAGGAGAGACAACTCCCACAACGAGTATTACTACGAGGAGGCAGAGACGGACCGCAGGGTCCGCAAGCGCAAGGCCAGGCTGGTGGTGGCGGTAGAGGAAGCCTTCACCCACATCAAGCGTCTCCAGGACGACGAGCCAGCCGCGTCGTCCCCCAAACACCCCCGTGAGGTGATGGACCCCCGGGAGGCAGCTCAGGCCATCTTCGCCCCCATGGCCCGGGCCATGCAGAAGTACCTGAGGACCACGCGCCAGCAACCCTATCACAGCATGGAGAGCATTATCAACCACCTGCAGTTCTGTATCACGCACAACATGACCCCCAAGgCCTTCCTGGAGCGCTACCTTTCTCCAGGCCCCACGCTGCAGTACCAGCGGGAGAACGGTATGGGTCGCCAGTGGACCCTAGTGAGCGAGGAGCCGGTGACATCAGCCCTGAGTCGGGGTCTCGTCTTCTCCCTGCGACGTCTCGACTTCTCCCTGGTTGTCACGGTgacacccctccccttcctccacctGGGGGAGGAGTTTATCGACCCCAAGAGCCACAAGTTTGTCATGAGGCTGCAGTCGGAAACctctgtgtagagagagggagagaaagtagtggataaaggggggggggtgcgagagaggaagagggaactTATGATTCATCTTTCCTCAAAGCCCATCTCTCTGTGTTGACCTCCGTGTGAAAAAGGGAGAGAAGACGGCTATGTGTCTCTTTTTTTGCACAAAGCAGTGGAAATGTGGCGTCTGCTACCAAGGGCTGGAGGAGAGACCTCTGTGGCTATCCCGTTTTATTAACTGTGTGtgaatgtctttgtgtgtgttactgtgttagtcATTGGGACTTGTATGTTTCTCATTCCTTGACAGTAACTGGACCGCATTATTTGAAGTtgacattactacattactaacCAATGAACTGATAAAATATTAAAGATAAATGTGAATAGGAAGACttgattaaacattttttttttttttttaaagaactagAAAAGTTACGTGCTTGCAAAAGTTGCAAATTAGCTACGACGTCAACCAATCAGGTGATTGGAATCACTGAATCGACAAATAAACTGACTGCTTCCTGACAGTGGAACCATTTTCATTGGACAACATCTGACCCTGGTCCAAAGGAAGTGGGTTGTTCTAGGGACAGCTGATGAATGTTTAGTTGAAACACTGAGCAGCTGATTTTCATAAGAAATTAAACGTTTAGGATATTTTTTGTGACGTTTATTAATGGATGTTATGTTGGGGACTTTTGAGGTGTATTCCAGTGTTGGTTTTATAATGAAGAAGACGGAACAGATACAAaaaacagactgaacctattgtcgTCATGATATGAGAGGTTATTTTTGTTTTTGGTCCCAAATAAAAGTCCATATCAGATATAGGGCTGAGTCCCAATAGTATCTAATTTCTCCTGAATTGTGGACTCATTTACTACTTCCCATCAAAAGCATTGCCTTGGTGGAGGCCAGGGCTAGtgggagtttccaccatattaCTTATACCAGTCATCAAGTCAGTGAAGAAGTCATTTTTTTGTAAGAAAGAGAGACACATCCATAGTCATGTGTACAACATGACCACTGTACTGTTCTGAACATTTGACCATGCCTaaacacacaaactaacacaTTTGTTTTTATTAACCTGTACTTGCGTGCAGTTTAAGATATGATTTGTTCGATTCAAGGCTCTGAGGTGAACATCAGCAACAGTCCTTATGGGTCCAGCACAAACAACGGTTCTTGGGCTCTTTGGCAGCTTAGAGCTGCTGTCGTCTGTCTCCTATTGTTGTATATAAATGTTTTTTATCTTTTTATATGTGTACCATATGTTTGAGACAATGGTAGcttttttcccctttttttctacataagaaatgcattttatttgatattttttaGTATCACTTCATGTTGTAAATACATTTGTAGATTGCAGTTATGATGTGAATGTTTTTCATATTTCATAATTTTAGGACTAAATTGTTACGACCTTTTCAATAAATTATCTCTCATGA

Function

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991332 lncRNA upstream 135355 41540893 ~ 41541142 (+) True G1738831
TU1991330 lncRNA upstream 137803 41538492 ~ 41538694 (+) True G1738829
TU1991325 lncRNA upstream 141152 41527669 ~ 41535345 (+) True G1738824
TU1990727 lncRNA upstream 150678 41455556 ~ 41525819 (+) True G1738291
TU1991416 lncRNA downstream 32026 41720403 ~ 41720637 (+) True G1738892
TU1991417 lncRNA downstream 33303 41721680 ~ 41722008 (+) True G1738893
TU1991453 lncRNA downstream 80406 41768783 ~ 41769071 (+) True G1738924
TU1991454 lncRNA downstream 81124 41769501 ~ 41769847 (+) True G1738925
TU1991612 lncRNA downstream 90450 41778827 ~ 41787548 (+) False G1739070
XM_036957847.1 mRNA upstream 4195 41643008 ~ 41672302 (+) False LOC110500439
XM_021577819.2 mRNA downstream 68 41688445 ~ 41693821 (+) False LOC110500441
XM_021577820.2 mRNA downstream 68 41688445 ~ 41693821 (+) False LOC110500441
XR_005038605.1 mRNA downstream 70 41688447 ~ 41693184 (+) False LOC110500441
XM_021577818.2 mRNA downstream 70 41688447 ~ 41693821 (+) True LOC110500441
XM_021578441.2 mRNA downstream 61148 41749525 ~ 41755052 (+) True LOC110500937
TU1990529 other upstream 647361 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 679177 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1122644 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 1272812 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1613172 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 200434 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 206952 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 596679 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 666200 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 812972 42501349 ~ 42502357 (+) True G1739440

Expression Profile