RNA id: XM_021577818.2


Basic Information

Item Value
RNA id XM_021577818.2
length 2271
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110500441
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41688445 ~ 41693821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATACTGTAGATTAATAGATTTGTCAGAAAATTCATGCTGAATGTACAATTCAAAGGAATAGTGTGGAATAACCTTTTATACTTGTGACTTTGACAAACTGTTTTTTGACACGTTTGTTAACAAAACGGAAGCCTAACCACAAATGACAGGATGTAGCCTCTGCATCAACTTGTCACTAGAAGGTGGAACAGTATCCATTTTGAAGGTCACATTTCAATATGGCATGTGTTGTTCTCGCTCTTCTTACAATCTTACCAGTGGTGATGGGAGATACCACTGGTTACCTGGGAGATTCGGTCACCTTGTCTTCTGGAGCCAACTCATCCTGGATCTTGAGCAAGATAGAGTGGTATATATTCAGCAACAACACCTGGATTGCAACGTACAGGAAAGAACCACACATTCTCAAAACAGACCGTTTCTGGCAGTTTCAGGGTCGTCTAAGACTCAACATCTCGTCCGGGGACTTAGAGATAAGAGATGTGAGGATAGGGGATGCCCTGGTTTACTCTGTTCTCCTGAAAGACTATAAGGGAGAGCAGCATAGCGTATCTGTCCAGCTCACTGTGAGAGAGCGTCTCAGCAAGCCCAGCGTCCGTAAGGTCTTCAGCATGTTGAAGCACAGCCATTGTGTGATGGCTCTTCAGTGCTCCTCTTCAGTGAAGGACACCCACCTCTCCTGGGAACCAGAGGCTGCGTTTGAGGATGCCTTCTGGAAGGGGAATCCCAACACCAACGTCTCTGTCGTCTGGACGTCTTACAGCCCCAACAGAAATGCCACCTTCACCTGTACTGCCAGCAATGGGCTCTCTAAAGCCTCCAGGGTTGTGACGGAGAGATGCCAAGGTACGGTCACTTCTAGGGCCAGGATTCTTTCCCCGGGAACACATGATCTGACCAGAAAAACAGTGGTGATTTCATCATTCTATGGGCAGGGAGTTCTTACGCTGGTCAAGCTTGCTGTTGTGTTTGAGAACAGTATTTGTCTTACAGTGAGGTATTTGGACAATGACACattttggttgtttcagattattttgtgccctatagaaatgaatggtaaataatgtattgtatcattttggagtcacttttattgtaaaaaaaaaagaaaaaagtagTGGGTGTGGTCAATGGCACAGTTTTAGAGGCTCTCCTCATGGCCGCATATACAAATGTTTTCCATTTtatagctaatttcctgcaattatacacattttgccatggcttacgCCGTGTCCTAATGCTATCTGAGTGACTTAAACATTAAAACAAAATCAATGGGTGCCCCATGCCATGACATTTTTGGAATTTCAGATTTTCAGATTTTTCTTATTTTGGTGATAGTTCTCAAAGatgatgttatttaaaaacattttgccccattatcttttctacagaCTTCATATCCGGTTTAAGTCGtgtaagtttacactgaaaaagcttgatgtagtcattgcatgctaggaatatgggtcCAAATACTAATCTTTTGACTACTTTACAACAACACAATTGTCACTTTCCAAATAtttttggacctgactgtatttctattctctccctgtctcctcagaGCCCGACATGGTGGGAGAGACCCGCTTCCCTGGAATAGTTTTTCTAATGTTGCTCTTAGGAATTGTGTTTGGATGTGTTTTAACATATATTTGTTTTAGAGTTGAGTTAAAAGTATTCCCCGTACCAACTTTGTAAACTTTGTTTTCATGTGCATGATGCCTTGCttaaaattgatgtaaaaaatgaaaTTCGCTGCAGCTGATTTGCTTGGTCCTTTCTTGCTGCAGCTTTCTGCGGAGTAATTGACACAGGTTTTTTAACTGACAATTATCTTGGGTGTTATCCCCAGGGTTTGGAAGGCGGCCCGTGTTCTCCCTCTCCACAAAGGTGGTGAGATACCAAAcccggtctcagggatggctaactctggagATCCCTTCGATCTCCAATGAGTTAGGTAAATCTGATTTGAGTTATCTTGAACTTTACTTGTGGAAAGATCTCCAAGGCTTTCTAAAGTTGGGTGAATTGGGGCCTCTAGGGGCAATTCAAAAGGCTAATTGAGGACCTTTATACTGAAGAATGTATTTGTTTTCTATGACTGTTTAGCTTTTTGTATATTGATGTGCTTATGAACTGTATATTGATGTGCTTATGaactgtatattgatgtgtatacagGGTTCATCTTTAAAATAGACCTTGGTCTTAGCATGACTCCCTGTTCAAATAAAGCtgaattattattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991332 lncRNA upstream 147305 41540893 ~ 41541142 (+) True G1738831
TU1991330 lncRNA upstream 149753 41538492 ~ 41538694 (+) True G1738829
TU1991325 lncRNA upstream 153102 41527669 ~ 41535345 (+) True G1738824
TU1990727 lncRNA upstream 162628 41455556 ~ 41525819 (+) True G1738291
TU1991416 lncRNA downstream 26582 41720403 ~ 41720637 (+) True G1738892
TU1991417 lncRNA downstream 27859 41721680 ~ 41722008 (+) True G1738893
TU1991453 lncRNA downstream 74962 41768783 ~ 41769071 (+) True G1738924
TU1991454 lncRNA downstream 75680 41769501 ~ 41769847 (+) True G1738925
TU1991612 lncRNA downstream 85006 41778827 ~ 41787548 (+) False G1739070
XM_036957856.1 mRNA upstream 70 41676246 ~ 41688377 (+) False LOC110500440
XM_036957855.1 mRNA upstream 70 41676497 ~ 41688377 (+) True LOC110500440
XM_036957850.1 mRNA upstream 16145 41643008 ~ 41672302 (+) False LOC110500439
XM_021578441.2 mRNA downstream 55704 41749525 ~ 41755052 (+) True LOC110500937
trnan-guu-128 mRNA downstream 85046 41778867 ~ 41778940 (+) True trnan-guu-128
trnan-guu-129 mRNA downstream 87387 41781208 ~ 41781281 (+) True trnan-guu-129
trnan-guu-130 mRNA downstream 88560 41782381 ~ 41782454 (+) True trnan-guu-130
trnan-guu-131 mRNA downstream 89732 41783553 ~ 41783626 (+) True trnan-guu-131
TU1990529 other upstream 659311 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 691127 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1134594 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 1284762 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1625122 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 194990 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 201508 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 591235 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 660756 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 807528 42501349 ~ 42502357 (+) True G1739440

Expression Profile