RNA id: XM_021578441.2


Basic Information

Item Value
RNA id XM_021578441.2
length 1519
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110500937
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41749525 ~ 41755052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATCAACACAGTGACAGACCCCAAACACACCCACGTCTCATCGTCTAACTCTCAAGCTGAGTGAAGGGGTATTTTCAGAGAGCAACTAGAGAATGTGACTTCCTTTTCAGCTAACATACAATCATAATTTTATAGAACAGCAGCCGTCATCAAAAGGACGTCTCTGCTCTTTCTCTACACTACTATTCCTTCTCTGTGTGTATCGGTTAGTCAACCGCTAGCTACCAGTGACAGTGATAGATAAGTACATACAGCCAGAGGAAACAGTCAAAGCCTTAAAGAGATGTCTGGTGgtcccttctcctccttctccaaacaggGAATACTGCTTCTCCTACTCTCCAACCTCCACTATGTTGTGGGTGTTCCTCTGATCATCAACAAGAGAGTGGGGGACTCCGTGGAGCTGCTGGCAGGCTTAGAGACAGAACATATAAAATCCTTGGTGTGGAAGTTTATGGGAAAGGATATTGCAGAATTCAATTCAGAGGTTGTATATTCACCTGCATCCCAGTTTGAGGGGAGACTAAAGATGAACGCCAAAAACTACAGTTTAACAGTCAGAGAACTGACACTGCAAGACTCAGGTGATTTTCTACTTACAGGTGAAGAGGACAAAGGTCAGATTGGCAGTAAGACCATCACTCTGAAGGTCCACGAGTCTATATCCAAGGTGGTGATCCACACAGACATCAAGCTATTGGCCAACCACTCCTGTACGGTACGGCTGGTGTGCAACGTGTCCTCCGACCCCAACATTACCTACACCtgggagagagacaatgagatCTACGGGGACGCCCAGCAgattcacttctctctctcaccagaaGAGAGAGACATCAGTGTAAAGTGCAACGCCTccaacctagtcagttggaaaacTGCTTTTGAGATGGCAAAGTGTAGTAATGACACAACCACCCCAGGACTGACATGGTATACCATCTACATCGGAATATCAGTAGGAGGCGCTGTGGTGCTGATCCTCACTGTAGCTGTGGCGGTGTGGTATTGCAGGGGACGAAGTAACACAGCAGATCTACCTGACAACACAATATATGCTGATGTTATGATCAACACAAGAAGTAGAGATACAAGATCAAACAGTCATGTAAACCCAATATCCTTCTATGAAACTGTCAATGATCTGGTTATCCCAAGATTGAACAAGCCGCAGACTCTGTATGATAAGATCGCGTTTGGACGCCCAGAAGGACCCCAGTCTCCCTACCAGAATGTACTGTGAGCTGAACAGGATGTGGTCATAGGTTGGGCCTCCCATAGATATGGAACCCTCTGCATGCTCTGCATCTTACACGTGTACTTTCTGTAGATAGGCCTAGACTTTACTGTCTATTTGCTTACTTTAACTTCTTTCTCCTTTTGATGATTctcatatatacagtatgtcataaGGCCTTATGCCTTTCTTTGAAGGCCTAGTTACaattacagtgcattgcgaaagtatttgtcccccttgaactttgcgaccttttgccacatttcaggct

Function

GO: NA

KEGG:

id description
K16853 SLAMF8, CD353; SLAM family member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991417 lncRNA upstream 27517 41721680 ~ 41722008 (+) True G1738893
TU1991416 lncRNA upstream 28888 41720403 ~ 41720637 (+) True G1738892
TU1991332 lncRNA upstream 208383 41540893 ~ 41541142 (+) True G1738831
TU1991330 lncRNA upstream 210831 41538492 ~ 41538694 (+) True G1738829
TU1991325 lncRNA upstream 214180 41527669 ~ 41535345 (+) True G1738824
TU1991453 lncRNA downstream 13731 41768783 ~ 41769071 (+) True G1738924
TU1991454 lncRNA downstream 14449 41769501 ~ 41769847 (+) True G1738925
TU1991612 lncRNA downstream 23775 41778827 ~ 41787548 (+) False G1739070
TU1991611 lncRNA downstream 25923 41780975 ~ 41787548 (+) True G1739070
TU1991622 lncRNA downstream 43871 41798923 ~ 41799152 (+) True G1739078
XM_021577819.2 mRNA upstream 55704 41688445 ~ 41693821 (+) False LOC110500441
XM_021577820.2 mRNA upstream 55704 41688445 ~ 41693821 (+) False LOC110500441
XM_021577818.2 mRNA upstream 55704 41688447 ~ 41693821 (+) True LOC110500441
XR_005038605.1 mRNA upstream 56341 41688447 ~ 41693184 (+) False LOC110500441
XM_036957856.1 mRNA upstream 61148 41676246 ~ 41688377 (+) False LOC110500440
trnan-guu-128 mRNA downstream 23815 41778867 ~ 41778940 (+) True trnan-guu-128
trnan-guu-129 mRNA downstream 26156 41781208 ~ 41781281 (+) True trnan-guu-129
trnan-guu-130 mRNA downstream 27329 41782381 ~ 41782454 (+) True trnan-guu-130
trnan-guu-131 mRNA downstream 28501 41783553 ~ 41783626 (+) True trnan-guu-131
trnan-guu-132 mRNA downstream 29675 41784727 ~ 41784800 (+) True trnan-guu-132
TU1990529 other upstream 720389 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 752205 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1195672 40552011 ~ 40553853 (+) True G1737866
TU1989857 other upstream 1345840 40401504 ~ 40403685 (+) True LOC110500409
TU1989649 other upstream 1686200 40062706 ~ 40063325 (+) True G1737353
TU1991654 other downstream 133759 41888811 ~ 41891367 (+) False G1739103
TU1991652 other downstream 140277 41895329 ~ 41897856 (+) True G1739103
TU1991899 other downstream 530004 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 599525 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 746297 42501349 ~ 42502357 (+) True G1739440

Expression Profile