Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00052805 |
| length | 1443 |
| lncRNA type | inter_gene |
| GC content | 0.31 |
| exon number | 1 |
| gene id | XLOC_025788 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 55386215 ~ 55387657 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0044085 | cellular component biogenesis | biological_process |
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0016072 | rRNA metabolic process | biological_process |
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0008152 | metabolic process | biological_process |
| GO:0034470 | ncRNA processing | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:0000154 | rRNA modification | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0000470 | maturation of LSU-rRNA | biological_process |
| GO:0042273 | ribosomal large subunit biogenesis | biological_process |
| GO:0071704 | organic substance metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0043484 | regulation of RNA splicing | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0031167 | rRNA methylation | biological_process |
| GO:0034660 | ncRNA metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0030684 | preribosome | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0140102 | catalytic activity, acting on a rRNA | molecular_function |
| GO:0008649 | rRNA methyltransferase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050657 | lncRNA | upstream | 262893 | 55122662 ~ 55123322 (+) | False | XLOC_025784 |
| TCONS_00050655 | lncRNA | upstream | 271458 | 55114097 ~ 55114757 (+) | False | XLOC_025783 |
| TCONS_00052804 | lncRNA | upstream | 549698 | 54834509 ~ 54836517 (+) | True | XLOC_025776 |
| TCONS_00052802 | lncRNA | upstream | 1049576 | 54332726 ~ 54336639 (+) | False | XLOC_025769 |
| TCONS_00052803 | lncRNA | upstream | 1049576 | 54332747 ~ 54336639 (+) | True | XLOC_025769 |
| TCONS_00052806 | lncRNA | downstream | 94463 | 55482120 ~ 55488241 (+) | False | XLOC_025789 |
| TCONS_00050663 | lncRNA | downstream | 94484 | 55482141 ~ 55488241 (+) | False | XLOC_025789 |
| TCONS_00052807 | lncRNA | downstream | 94521 | 55482178 ~ 55488241 (+) | False | XLOC_025789 |
| TCONS_00052808 | lncRNA | downstream | 259216 | 55646873 ~ 55654264 (+) | True | XLOC_025790 |
| TCONS_00050665 | lncRNA | downstream | 711599 | 56099256 ~ 56107909 (+) | True | XLOC_025791 |
| TCONS_00050661 | mRNA | upstream | 95578 | 55288202 ~ 55290637 (+) | True | XLOC_025786 |
| TCONS_00050660 | mRNA | upstream | 95585 | 55288200 ~ 55290630 (+) | False | XLOC_025786 |
| TCONS_00050659 | mRNA | upstream | 254163 | 55131289 ~ 55132052 (+) | True | XLOC_025785 |
| TCONS_00050658 | mRNA | upstream | 262776 | 55122662 ~ 55123439 (+) | True | XLOC_025784 |
| TCONS_00050656 | mRNA | upstream | 271341 | 55114097 ~ 55114874 (+) | True | XLOC_025783 |
| TCONS_00050667 | mRNA | downstream | 775619 | 56163276 ~ 56342119 (+) | False | XLOC_025792 |
| TCONS_00050666 | mRNA | downstream | 775619 | 56163276 ~ 56342119 (+) | False | XLOC_025792 |
| TCONS_00050668 | mRNA | downstream | 888689 | 56276346 ~ 56284122 (+) | True | XLOC_025792 |
| TCONS_00050669 | mRNA | downstream | 978738 | 56366395 ~ 56394018 (+) | False | XLOC_025794 |
| TCONS_00050670 | mRNA | downstream | 989669 | 56377326 ~ 56393599 (+) | True | XLOC_025794 |
| TCONS_00050662 | other | upstream | 87057 | 55299043 ~ 55299158 (+) | True | XLOC_025787 |
| TCONS_00050635 | other | upstream | 1318576 | 54067523 ~ 54067639 (+) | True | XLOC_025764 |
| TCONS_00050620 | other | upstream | 2557209 | 52828912 ~ 52829006 (+) | True | XLOC_025751 |
| TCONS_00050613 | other | upstream | 2766040 | 52620058 ~ 52620175 (+) | True | XLOC_025746 |
| TCONS_00050578 | other | upstream | 5311025 | 50069595 ~ 50075190 (+) | False | XLOC_025717 |
| TCONS_00050664 | other | downstream | 95856 | 55483513 ~ 55483647 (+) | True | XLOC_025789 |
| TCONS_00050682 | other | downstream | 2248717 | 57636374 ~ 57639448 (+) | False | XLOC_025808 |
| TCONS_00050688 | other | downstream | 2438282 | 57825939 ~ 57829919 (+) | True | XLOC_025812 |
| TCONS_00050692 | other | downstream | 2610333 | 57997990 ~ 57998559 (+) | False | XLOC_025817 |
| TCONS_00050699 | other | downstream | 2780866 | 58168523 ~ 58170414 (+) | False | XLOC_025821 |
