RNA id: TCONS_00052808


Basic Information

Item Value
RNA id TCONS_00052808
length 1370
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_025790
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55646873 ~ 55654264 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGACCCAGCAGGACTATAGCCTACGGCCCCAACTCAAACCTGACCTTTGGAAGCTCTCGCTCAGAGTCAGGTATTTAGCACAGCTGGGTTCACATTCTTCCCTCGCTCACCCCCTCATTCATGCTTTCTTTCATGAGGTGCCTCGCCCCCCCTCTGTCCTTCTTTTCCGCCTGCTCAAAAAGTGTACTTATTCTCCATCCGTCGGGGTTTTTTTTTCCTAGATAAAAGTGCGAAGAGAGGCAGCTTAAATCAGAGGAGAACGGTGGTAAATAAGAATCGGAGAAGATGAAGGCCACGGTCTCTGTGACTCACAGAGGAACCGCTGCTGCGTGTTGTTTTGTGAATAACTCGATTCAGAAACACAGAAAGGGAGAGAAATAAGTTCCACATGCTTCAGAGGAACAAAAAAGTGCCCcgagagagaggaaaaacagaCTGCTCAAGGAACATTCTTCAAAAGGAAATCAGGGAATAACATCAAAAAAAGAGAGACTTTGCTTACTTTCGTCTGGTTCTTAATCATCTCCTACATAAACAACCCGACAAAGATAAGCAGGGATGAAACATTCTGTCACCTTCTTCAAGATCACCCTCCCAATGGGCTGTCTTTGAGACAGATAAACATTTGTCTGGCACCACTCTTTGATGGGTCACCTCATTTACAACATCGAGAGTTGTGACAGGTACTAATTCGTCAAGCCAAATTCGCCCTGATGTTTTGTTAAACCCAGACAATAAACCTTTTTAAATAACCAAACCGCTCATCAAGACATCTAAAGGTGTCATACAAGCATCACTTACTGCAGTAAGAAAGTGGGACTACACACTCTGTTTAAATCagaataagctaaattatttgAAATGCTTTGTGCTGTTCACGGCAAAGCAACaacaaaagtttcatttttggatCAGTGACTTTTTTGATGTGTGTCACTTGTTTTATCCGTTTGATGACTGAAACCAATTCTGCATTGTGAACTAGCCTTGATCCTTGAAGATGATCCTCTAACTGAAGAAGAATTTCAAAGCGGAGGAAACTGTGTGGAGCCAGCAGAGGGCCTGGTGCTAGACAATATTTACATGAAAGGAAGAGCTGCTCTATTGATGTTTTTTTCTCCCTTCGCTCTCTGCGTAATGCAAGCCAGgagggGGAGGAGGAAGGCAGACACAAGGAGGCAAAGGAAAATAAAACAGATCATCATTTGCATGGTATACACAGAGCAGTGACCATGCCTTGGGAGGAAACGATGGCGTAGGCAAATAAACAAGACTGGGACAATACCGGTACAGCGCAATCAGAAGATAACGTTTTGTCAACATTTATCCATGTCTTTCCAAAAGTGAGATAGTATGCACATTTCCAAGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052806 lncRNA upstream 158632 55482120 ~ 55488241 (+) False XLOC_025789
TCONS_00050663 lncRNA upstream 158632 55482141 ~ 55488241 (+) False XLOC_025789
TCONS_00052807 lncRNA upstream 158632 55482178 ~ 55488241 (+) False XLOC_025789
TCONS_00052805 lncRNA upstream 259216 55386215 ~ 55387657 (+) True XLOC_025788
TCONS_00050657 lncRNA upstream 523551 55122662 ~ 55123322 (+) False XLOC_025784
TCONS_00050665 lncRNA downstream 444992 56099256 ~ 56107909 (+) True XLOC_025791
TCONS_00052385 lncRNA downstream 704418 56358682 ~ 56360650 (+) True XLOC_025793
TCONS_00050672 lncRNA downstream 920395 56574659 ~ 56581029 (+) True XLOC_025795
TCONS_00050673 lncRNA downstream 964931 56619195 ~ 56622872 (+) True XLOC_025796
TCONS_00052809 lncRNA downstream 1167435 56821699 ~ 56822203 (+) True XLOC_025799
TCONS_00050661 mRNA upstream 356236 55288202 ~ 55290637 (+) True XLOC_025786
TCONS_00050660 mRNA upstream 356243 55288200 ~ 55290630 (+) False XLOC_025786
TCONS_00050659 mRNA upstream 514821 55131289 ~ 55132052 (+) True XLOC_025785
TCONS_00050658 mRNA upstream 523434 55122662 ~ 55123439 (+) True XLOC_025784
TCONS_00050656 mRNA upstream 531999 55114097 ~ 55114874 (+) True XLOC_025783
TCONS_00050667 mRNA downstream 509012 56163276 ~ 56342119 (+) False XLOC_025792
TCONS_00050666 mRNA downstream 509012 56163276 ~ 56342119 (+) False XLOC_025792
TCONS_00050668 mRNA downstream 622082 56276346 ~ 56284122 (+) True XLOC_025792
TCONS_00050669 mRNA downstream 712131 56366395 ~ 56394018 (+) False XLOC_025794
TCONS_00050670 mRNA downstream 723062 56377326 ~ 56393599 (+) True XLOC_025794
TCONS_00050664 other upstream 163226 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 347715 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 1579234 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 2817867 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 3026698 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050682 other downstream 1982110 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 2171675 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 2343726 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 2514259 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 3048056 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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