RNA id: XM_021578376.2


Basic Information

Item Value
RNA id XM_021578376.2
length 4087
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110500845
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41942621 ~ 41975186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGACATGACCGTCTCGTTTGTGCGCACGAGGGGTCTCAAAGCATTGATGACATACAGCGGGAGAGAAGCATCCGCCGGACAGAGGGGCAATCAAATGTAAAACGAACGATTCCATCCTGCAGCGTTTCCATAGCACTAGCCTCCTATACAGTTATTTTGATGTTTCTATCACGAATGAATCGATGACGAAGAAGAATAAGAAGGAAAGGGAAGATTGGAGGAGATTCGCTTCTCTCATAACGGGGTACCGGTGAAAGAGGGGCAGTAGCCTACCTATTAGTCAAAAACGTCAAACGAGAATAGCCGCACCATCATCAATCGCGTCTGTTTGTCGTGAGATGACAAAGTGAAGTGGCGGATCATGTCTCAGAAGAAGATATTTCTGGTCTTTGTGGCAATCAGTACCGTCAGCCTACTGCTGCACCATGGGGGCCATTTCAgctgGACGATGGAAGCCTTTCACCTCGGCTGTCCGTCACTACGCACccacctgtcctcctctctcaaGCCCAAACACACCAACGTGGCCTTCCTCAAGACGCACAAGACGGCCAGCACCACCATGCAGAATCTGCTCTTCCGCTTCGCAGAGCGCAACAACCTGACAGTAGCGCTCCCTGTGCAGGCCTGCGGACACCAGTTCTGCTACCCGCGCACCTTCAACGCCCACCTCGTCCACCCGCACACACTGCCACCCAACGTGGTCACCAGCCACATGCGCTTCAACCGTGCCGAGATGCAGCGCCTCATGCCTAATGATACCATCTACGTGACCATACTTCGAGAACCAGGGTCCATGTTTGAATCGTTGTTCAGTTACTATAACCAGTACTGTCAGAGTTTTAAGAGAGTTCCCAATGGGTCCCTGGAGGCATTTCTGGACGAGCCGTGGCGGTACTACCGTCCGGACGAAAAGGACTCCATGTACGCCCGTAACACGCTGACCTTTGACCTAGGTGGGGACAAGGACCGTCCGGCGGCAGACGCAACAGCGTACGCCCGGGCCTTTGTGGccgagacagaacgcgtcttctccCTGGTGATGATCGCCGAGTACTTTGACGAGTCGCTAGTCCTCCTCCGTCACCTTCTCTCCTGGGATCTGGAAGACGTGCTCTACGTCAAGCTGAACATGCGAATGTCCGGCTCCAAGCACAGCCTCTCGCCAGGCCTCCCCTTCAAGATCCGCGCCTGGAACGCCTTGGATGCACGCCTCTATGATCACTTCAACGCCTCCCTGTGGCGCCAGCTGACTGCCCTGGGCCCGGCGTGCGTGGCCAGGGAGGTGCGGTTGCTCCGCAGGGCCCAGGAAAGGCTTGTGAGGGGCTGCTTTGGAGGACGGCTTCCCCAGCTCCGCTCTGCTGCCCAGATCAAGAACAAGGAGCTGCGGCCGTGGCAGCCCAGTGCAAAGGTGGACATCGTGGGCTACGACCTGCCGACCAACACCAACGCCACGTGGCCCGGAAGTCTGGCCCACGAGCTGTGTCTGAAGCTCATCATGCCAGAGGTCCAGTACACCAGGGTCCTGCTTCGATCGCAGTCGCTACGCTACAGACGCAGCTACCCGCTCCGCTCCCCTCAGCCCCAGCCGCAGCAGCCCGTACGGTCGGTCCTGCCACGCCACCAACAGGTGGGGATACAGCAGATACACCGGGAGGCCCTTCCTCCAGGACTTGGTCCCGCCTCTAGCCCCACAGCCACCTCTCAACCTGCAGGGACCCAGAGCAGGGCCACCAGGGTGGGGCTAAGGCCCTCGGGCCCCCAGAGGCAGACGCCATAACTTAAGACTGCAGCACCAGCCTTGAATATAGACAGACTGAATACAGCCAGACTAAATAcaggcatgcagacagacagacagactgtcctCCAGACTTCAGCCATTTGTCCCCAGGGACTGTATCAGGGGGTTCTggaggagatagggagagggggggacaCCCCCAGATTGGGGCTGGAGATTGGGGTAGGACCCCATCATTATGGGCACAGGCAGAGCACTCTCATTAATTACAAACTCTGTATGGAACAATAAAGAACTGTTACTCTCGctttatctctctcactctctaatgccacccccaccccctcccaaACCTTGAGAAGATCTTGATGATGACAGTGAGAGGGTCAGCGCTCCGGGTCCGTGTCCAACCCTCTAAGCCTTCTCCAGAGAGGAAAACCATCCAGTCCTGGGCCTCTCACCCAATGACTTTACCCCCTCCCACTGAGTGTTAGGCCCCAGGACAGGTCAAATGTCAAAAGTTAGGCCAGTGGTCCTTAGACtgaccccccgccccccccccacacacacacacactcgcagccCTTACACcaactctctccctcctgcccacCCTGCTTTAGAAcatttctctctgcttctccgaccccagctcatctctctctcccctccaccagCAACTGAACTAGACCATGGCGGCTGCTGCTGACAAATGGGATGTTTTTAGATAtgggaattgtgtgtgtgtgtgaaagcgtTTTTCctatgtattttatttatctgGGGCGTTATCGCAATAAAGTTTTATGTAAAGGTAGGGATCTTATAaccacaagacacacacacacaccggactcaACCCGTTGTTGGTTCTGCAAGCCTGCTAAAAGACATGATGAGTGAGAGCTACAGTGTTTGAATATTTAATTATGTATTCTTAATGAGGCTCTCTTTGGAGAGACCTTCCACttgggttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcaatgtgGAACTTGCCAAAGCAGCTTACTTATCCGAAGCAAAGCATAAGGAGGAAATAACTACGAAACTGGGGGAAAGCAGTAGAAGAAGAGAGAGTCTGGGTCCTGTTCATTTGGACACACTgtggaaaacattttaaaacattttgcaatgggaaTTCGAAAAATATGTGTTTCTTCTTCGACAACTCCATATACTATTTATTCCCTTCCTGTTTCAGTCCTTGGTCtcccatttggtgcctaatgaacatggccCTGGTGTGGTGGCTGTCATGTGGAGGTGTTTTGCCACTCGTTTCATTATGTGGTACATTTTTTATGCAGTTGGTTGTTCATGTTTAACCTAAATGGTATGCTTCGACCTGGGTGTCcttgacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttctgagtatatattatttattctcttcatcactggaaaaaaACAGTCTGTTTATGTTTACCTTCAATGTATATTTCCGATTTTGGAACAGGACATTGTATTGTGGACCAAATCACTAATGGCAATACACACTGTGCTGTACATGGCATGTTCTGATGAATAAAATGTAAATTTCTACATAGGCCAACCACAAAAGCTACTCAGACAGCACCAAGTGTAATCACTGAGGCATGAATTTTATTGTGTTTTAAGTGCTTCATAATGCTCTagtgtgcatcccaaataacagcctattccctacattgtgtattatttgtagtgcactatgtagggaatagggtgccatttcagttCTAGTCTAGTGGAAAGAGGACAGGGTAGAAAGATAACTTTCCGAAGAGCCCTTGACCCGTGAAATCCTCCATGTTTGACTGCTGTTCATTTTTTAAAGTGCTCTTTGATTGTACTTTATTtttcatcccaaatgtcaccctttaaatagggaataggttgccatttgggacacaaggtATCAAATCTAGGCTGGTTTCTCGGTTTTTAGAAACATAACTAACACAGAATGGTGGTTGTGTCACCTACAAGTCAGTGTTAGCAAGCCTTTTTAGGAATGCtagaattaagcaataaggcccgagggggtgtggtatatggccaatataccatggctaagggctgttctaaagcacgatgcaacgcggagtgcctggacacagcccttagccgtggtatattggccata

Function

GO: NA

KEGG:

id description
K09676 GAL3ST3; galactose-3-O-sulfotransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991694 lncRNA upstream 5245 41935433 ~ 41937376 (+) True G1739131
TU1991675 lncRNA upstream 15973 41920599 ~ 41926648 (+) True G1739115
TU1991673 lncRNA upstream 19281 41920599 ~ 41923340 (+) False G1739115
TU1991622 lncRNA upstream 143469 41798923 ~ 41799152 (+) True G1739078
TU1991612 lncRNA upstream 155073 41778827 ~ 41787548 (+) False G1739070
TU1991640 lncRNA downstream 138130 42113316 ~ 42120480 (+) True G1739093
TU1991816 lncRNA downstream 147204 42122390 ~ 42123986 (+) True G1739245
TU1991631 lncRNA downstream 167167 42142353 ~ 42143265 (+) True G1739084
TU1991860 lncRNA downstream 252928 42228114 ~ 42228789 (+) True G1739286
TU1991862 lncRNA downstream 253929 42229115 ~ 42229351 (+) True G1739288
trnan-guu-197 mRNA upstream 62787 41879761 ~ 41879834 (+) True trnan-guu-197
trnan-guu-196 mRNA upstream 65477 41877071 ~ 41877144 (+) True trnan-guu-196
trnan-guu-195 mRNA upstream 66644 41875904 ~ 41875977 (+) True trnan-guu-195
trnan-guu-194 mRNA upstream 70873 41871675 ~ 41871748 (+) True trnan-guu-194
trnan-guu-193 mRNA upstream 72034 41870514 ~ 41870587 (+) True trnan-guu-193
XM_036957880.1 mRNA downstream 31129 42006315 ~ 42052638 (+) False LOC110500448
XM_036957881.1 mRNA downstream 31129 42006315 ~ 42052638 (+) True LOC110500448
trnas-gcu-263 mRNA downstream 113483 42088669 ~ 42088750 (+) True trnas-gcu-263
trnas-gcu-264 mRNA downstream 115454 42090640 ~ 42090721 (+) True trnas-gcu-264
XM_036957873.1 mRNA downstream 144086 42119272 ~ 42185004 (+) False LOC110500450
TU1991652 other upstream 44765 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 51254 41888811 ~ 41891367 (+) False G1739103
TU1990529 other upstream 913485 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 945301 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1388768 40552011 ~ 40553853 (+) True G1737866
TU1991899 other downstream 309870 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 379391 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 526163 42501349 ~ 42502357 (+) True G1739440
TU1993038 other downstream 1280467 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 1292028 43267214 ~ 43268143 (+) False LOC110500499

Expression Profile