RNA id: XM_036957880.1


Basic Information

Item Value
RNA id XM_036957880.1
length 4093
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110500448
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42006315 ~ 42052638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACAATCACTACAGAACTTCTCACGCTATGATACAACGGCGCATTCCCGAAAAGACCATTCACAGCATGGCACTCACTGAAAGAGAGACTTTCGCCAAAGGGCAAATGTTGCGGTTATCTGTATCCCCAAATCCCATGGATTTTTAACTGAACAGGAAAAAACACCCAACGAACATCAAGTTAAGCATCTTAAGAAGAATATAAAAAATAGGATAGCAGAGATGCAGGGGGACCTGGGCACCCAGAGGAGTTTCAGTGTGTTGGACcgcctcctccacacacaccctaTCTGGCTGCAGCTGTCAATCAACGCTGACTCCGCCCTCTACATCTTGCTCAGAGAACCTGTCGGGACGTTCCTGGTGCGTAAATGCAGCTCCAGCCAGAGGAAGATGTTGTGTGTCCGAGTGACAGCTGACAGGGCAGCGTCCTCCATCAAGGAGTGTCTCATATGTGAGGAGGACTCAACCTTCGCCCTGGAGAGCTCCGCCCTCAGCTTCCCAGACCTCTGCCGATTGGTGGCCTTCTACTGCATCAGCAGAGATGTGCTGCCTTTCCCTTTGGAGCTTCCAGAAGCCATTGCTCAGGCCTCTTCCCACAGAAAGCTGGAGGCCATCTCTCATATGGGATTAGAGTTCTGGTGTCCCCTGTCTGACACCCAGAATGGACCAGGGGACCGGCAGGCTCCACCCACCATCATTAAGGCCCCACCCAGCACCACCAAGACTCCACCCATCAGTGCCACCCAGGTCAAGGCAGGTCTGTCCCAGGACCTGTGTTACCTGCTGTCCTGCGGCAGACAGGAGTCTCTCTGCTTCATCAACCCACTCTTCCTACAGGTGGAGcagcagcagcaacagcagccaACCCAGGTGGCGTCACACAAACGCCACCGCTTCAAACGCAGTATGAGGGTCCGTGTCTCCACCGAGAGCTCCATGACTCTGTCTGGTGGTGGGGGGGCTGGGTCGTTCCCTTCCTCAGTTCCAGAAGAACCCCAGGACCAGGAGAGGCTCCAGCCCACCCCCCTCCAGCCCAGTCCCAACCCACACAGGAAGATCCATCCTGGGGCTGGCGTCCTGAGGAGGACCCCTGCACTGTCCCCGACGTCGGCAGAAGATGAGGATCTCGTGCCAATAAATGTACCGCCACCGGTAAAGGCTCCAACAGAACAGGTGGTGGAGGTAGAAGAGGACCTTCCTGCTCCAGAGGAGCCTAGCATCGAGGTGGCGTGCCTAGCCTTGGAGGGCCGCCCGGCCCCCTCTCTGGCCGAACTGGACAGCAGCAGCTCATTCAGCAGCCTGGAGGAAGAGGAACCAGAACCAGAGGACCAGTTCTTTAAACAACCAAACCACAACCCCCAGCACCGCCCGCCCATGGTGCGCTCACGGGGGGGCCACGGAGGCCTCCACAGGATGAGTGCGGCGTTTGTGTGTTTCTTCGCTCCAGAGAAGAGGCTCGCCAGGCTGGTGGAGGAGCTGTCCAGGGATCGGAGgtcTGCATTTGGTTCCCTGGTCCAGGAGTTcatccagagacagagagaggagctgagagaGGTCCTGGCGCAGGCTGCATCCTCATCATCGTCTTTCTCATCGACGACCTCCGTGGGGGTGCTCCAGGGACTGCGGCGCTTCCTGTCCCAGGCCAATTGCTTCCTGCTGGACAGCGGAGAGCTGTCACCCCCCCTAGAGACCCTGGTGCCTGACAATGAGAAAGACTTAGCCCTGGAGAAGGCCATGTTTGGCTGTGTGCTGAAGCCTCTGAGGGTGCTGCTTGGCcaggccctcctctccctccacagaCAGGATGGCTCCACCCAGCGCCTGGCCTGCAGTCTCCTGGACTGCCAAGAGGGGGCGATGGAGCACCTTGGGGTGCTTGTGGGCGTGCCCGACACCCGTGGCGTGGAGAGGGTGAGGCAGAAGCTGGCTCTCATGCAGCGCACACACTCGCCCATAGACAAGATGCTGCTGCTTCTGCAGATGTGCAAGGCGGTCCAGAAAGCCATGGGGGCCCTCCACGACGGTGGACAGGAAGTGAGCTCGACGGACTTCCTGCCGGCGCTGTCCTATGTGATAGTGATGTGTAACACACCTCAGATCCTACTGGAGGTGGAGTACATGATGGAGCTGCTGGAGCCCTCCTGGCTCACTGGGGAGGGTGGGTACTACCTGACCAGCGTCTATGCCAGCCTGTGTCTGATCCAGAGCCCGGAGGCGGAGGGGGACCAAGTCCCCCCAGGAGGTCTGACTCGTGAGGCCCAGGATGGGCTGAGGGAGTGGGGCCGCAGACGCAGCCTGGAAGCCAAGAGCCACCAGGAGAGACAACAGAACCAGaggtgCGTTCGGGTACTATTCCAGGACGGCGAGCGCAGTGCTGTGCGGACGCTGCAGTGGAGAGCCGGCGAGAGCAGCGAGGCCCTGGCCCAGCTCTGTGCCTCCACCTTCGCCGTCTCCGAGCCCCAGGACTACACCCTCTACTGGAGGTCCGGGGGGGAGATGAGGACCCTTCCCACCCAGGCACAGCCTAAGGACCTGGCCAGCCACAGCGAGGgaggcccctctctctcctacctccgcACGGACCACGACTTCAGCAAGATGCGGCGGCTGACCAGAGGGGGAGCTGTGGACCTGGGGGAGTCTATGTGTGAGGAGTgattgagggaaggagagaggaagaggaagagagggaagggtacTTCTCGGATCTCAGCGTTTTtcgattggttgattgattaaaAAAGCTGTGTTGTGTCTTGGACGTGTTGTCATAACTACAGCCCACACTAAAGACTAAGGGGcaagtctcaaatggcaccctattccatagtgGAGGTTTAAAGGTAGCGCACTGCACTACATGTttgttgaaagtagtgcactatatggggaatatggTGTCACTTGATACAGCCTTAGATAAAGGGGAGGTTGGTAGTCTATTATTCACATCACTTCTGTGCATCAGTCTGCTGCTCGCTGGTTGgaaccatagaattagaatgaattCTATGTCTATGTTCAGAACCCTGTTACCGAGGGTTGGGGTGGGGGGCTAAACCACTAGCTACCAGTATGTCCTTTGGGAGTATTGCTACTGTACAAGCAACATAAATATTTTTTACAAGACCAAACCTCAATACCAAAGTTAAGAAAGTAAAGTCATACACATAGGAATGTGTGAAGCTTAAAGGATAATCTTTACTTTAACGTAAGATGAACGTGGTTCTTTTGACTTATTTACAGTGTTACGGATATAGGAGTAAATAAGAGCCAATACAAGCAAACGCCATGAAGCCATTTTGTGATTCTGGGTCTGAGGTACTGTTGATGTTGACGCTGCCATCTCTCGTCACATATTGTCGACAGTTGACAGGGTGGGGGGAAATATTCTAAACTTTACAAGTAGACAACATGTATGAGGACTTTTGTTAAATGGCACAATATTTCCTTGTTTTGCCAAATTAATTTTACCTTACGATAAGAAAGGGACATATTTGTCAGAATAATACCTTTTTTTCTGTTTTACTTTCAATTACTGTTTCTATAGAACTGCTGTAACATTCCATGAAAAAATGAGCTTCTCAGAGAAAAGACAATCCGTGACAACGGCCAATGAAAATGGGACCATGTAATACCTCATGGTGATTGGTTGAATGTAAAGTCACCATGGTGACTCCTCCCGCTGCAGGTCATCTTTGTCAACTGACTGTTCAACTCAATGTTATTTTCAAAAAACAACTTATGATAATGTATTATTACAATAATTGTTTAAAAATGTGGAATAGTTATATTTAATATGAATCACAAGTTTGTTTATGAAAGTGAAATATTTTACTTAATGAAAGTTTCCATTGGACGACGGTTAATTTAAAGACGAACAATGACACATTCTCTGAAGACTATTGCATGCTGTTTTCATTTTATGTAAAGAACCTGCAGGTTTCGTATGTGATGCATGTGTTGGTTGTGTTGAAAAATGCAACATTATGGCATTCACTTTCTTTTCTTGTATAACACATTGCTGTATTTTTTCCAGAATTACAAAATCGCAATAAAATTGCAATATCTGTTCATAGTGCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991694 lncRNA upstream 68939 41935433 ~ 41937376 (+) True G1739131
TU1991675 lncRNA upstream 79667 41920599 ~ 41926648 (+) True G1739115
TU1991673 lncRNA upstream 82975 41920599 ~ 41923340 (+) False G1739115
TU1991622 lncRNA upstream 207163 41798923 ~ 41799152 (+) True G1739078
TU1991611 lncRNA upstream 218767 41780975 ~ 41787548 (+) True G1739070
TU1991640 lncRNA downstream 60678 42113316 ~ 42120480 (+) True G1739093
TU1991816 lncRNA downstream 69752 42122390 ~ 42123986 (+) True G1739245
TU1991631 lncRNA downstream 89715 42142353 ~ 42143265 (+) True G1739084
TU1991860 lncRNA downstream 175476 42228114 ~ 42228789 (+) True G1739286
TU1991862 lncRNA downstream 176477 42229115 ~ 42229351 (+) True G1739288
XM_021578376.2 mRNA upstream 31129 41942621 ~ 41975186 (+) True LOC110500845
trnan-guu-197 mRNA upstream 126481 41879761 ~ 41879834 (+) True trnan-guu-197
trnan-guu-196 mRNA upstream 129171 41877071 ~ 41877144 (+) True trnan-guu-196
trnan-guu-195 mRNA upstream 130338 41875904 ~ 41875977 (+) True trnan-guu-195
trnan-guu-194 mRNA upstream 134567 41871675 ~ 41871748 (+) True trnan-guu-194
trnas-gcu-263 mRNA downstream 36031 42088669 ~ 42088750 (+) True trnas-gcu-263
trnas-gcu-264 mRNA downstream 38002 42090640 ~ 42090721 (+) True trnas-gcu-264
XM_036957873.1 mRNA downstream 66634 42119272 ~ 42185004 (+) False LOC110500450
XM_036957876.1 mRNA downstream 66634 42119272 ~ 42185004 (+) False LOC110500450
XM_036957877.1 mRNA downstream 66634 42119272 ~ 42185004 (+) False LOC110500450
TU1991652 other upstream 108459 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 114948 41888811 ~ 41891367 (+) False G1739103
TU1990529 other upstream 977179 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 1008995 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1452462 40552011 ~ 40553853 (+) True G1737866
TU1991899 other downstream 232418 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 301939 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 448711 42501349 ~ 42502357 (+) True G1739440
TU1993038 other downstream 1203015 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 1214576 43267214 ~ 43268143 (+) False LOC110500499

Expression Profile