RNA id: XM_036957878.1


Basic Information

Item Value
RNA id XM_036957878.1
length 5108
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110500450
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42119272 ~ 42185004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTAAACGTCATTGACACAGGAATGGGACAGAAAAAAACCCATCATGGGGagaatgtcaaatatatttttgtaaaaaCGCAACGTTTCTACTCAAGAAAATGATGATTCGTTTTGTCCGGGGTGGAATAGCGGCATCGAAAAGGATCTAACTACGTCATGTCTAACGGGGGCGGGGTGATGAGTAGCACCACCCACCTGCTGGACTTCCTGGAGGAGCCCATCCCGGGGGTCGGCACCTATGATGACTTCCACACCATCGACTGGGTCCGGGAGAAGTGCAAGGACCGGGAACGCCACCGCAAGATCAATGCTAAGAAGAAGGAATCAGCTTGGGAGTTTACCAAGAGCCTGTATGATGCCTGGTCTGGGTGGCTGGTGGTGACACTGACAGGGCTggcctcagGTGCTCTGGCTGGTCTAATCGACATCGCTGCTGATTGGCTGAACGACATCAAGGAGGGGGTGTGTCTGAATGCCATGTGGTTCAACCATGAGCAATGCTGCTGGGGCTCCAACGAGACCACGTTCGCTGAGCGGGACAAGTGTCCTCAGTGGAAGAGCTGGGCGGGGCTCATCCTGGGCCAGGAAGAGGGCCCTGGTTCCTACATCATGAACTACTTCATGTACATCTACTGGGCTTTGTCCTTCGCCTTCCTGGCTGTGTTACTGGTCAAGGTGTTCGCCCCTTACGCCTGTGGCTCCGGTATACCTGAGATAAAGACCATTCTGAGTGGGTTCATCATCCGGGGTTACCTGGGGAAGTGGACCCTGCTGATCAAAACCGTGACCCTGGTGCTGGCTGTAGCGTCTGGGCTGAGCCTGGGGAAGGAGGGACCCTTGGTCCACGTGGCCTGCTGCTGCGGAAACATTTTCTCATACCTCTTCCCCAAGTACAGCAAGAACGAGGCCAAGAAGCGAGAGGTCCTATCTGCAGCGTCAGCGGCCGGGGTGTCCGTGGCTTTCGGTGCTCCCATAGGAGGAGTACTCTTCAGCTTGGAGGAGgtgagCTACTACTTCCCTCTGAAGACCCTGTGGCGCTCCTTCTTCGCTGCATTGGTGGCAGCCTTCATCCTCCGCTCCATCAACCCGTTTGGCAACAGCCGTCTGGTCCTATTCTATGTGGAGTACCACACCCCCTGGTACCTGTTTGAGCTTATCCCCTTCATCCTGCTGGGGGTGTTTGGAGGCCTCTGGGGGGCCTTCTTCATCAAGGCCAACATCGCCTGGTGCCGAAGGAGGAAGTCTACCCGCTTCGGGAAGTACCCCATCCTGGAGGTGATCTTCGTGGCGGCCATTACCGCGGTCGTGGCGTTCCCCAACCCGTACACGCGGCAGAACACCAGCGAGCTGATTAAAGAGTTGTTTACCGACTGCGGACCCTTGGAGTCGTCCCAGCTGTGCCAGTACAGGAGTCAGATGAACGGGAGCAAGGCGTTTGTGGACGCGTCTCCCAACAAGCCGGCTGGACCCGGGGTGTACGCAGCCATTTGGCAGCTGTGCCTGGCGCTCATCTTCAAGATCATCATGACCATCTTCACCTTCGGACTTAAGGTTCCTGCTGGCCTGTTCATCCCCAGTATGGCCATCGGGGCGATCGCCGGGCGTATCGTTGGCATCGCCGTGGAGCAGCTGGCGTACTACCACCACGACTGGTTAGTGTTCAGGGAGTGGTGCGAGGTAGGCACCGACTGCATCACCCCGGGACTCTATGCCATGGTGGGGGCCGCCGCATGTCTGGGTGGTGTAACGCGGATGACCGTGTCTCTCGTGGTCATCGTGTTTGAGCTGACGGGCGGCCTGGAGTACATCGTGCCCCTCATGGCTGCCGTCATGACCAGCAAGTGGGTGGGCGACGCCTTCGGGCGCGAGGGCATCTACGAGTCACACATCCGCCTGAACGGGTACCCCTTCCTCGACGCCAAGGAGGAGTTCACACACACCACGCTGGCGCGGGAGGTGATGCGGCCACGGCGTAGTGATCCGCCGTTAGCGGTGCTGACGCAGGACGACCTGACAGTGGAGGAACTACAGGGGATCATCAACGAGACCAGCTACAATGGCTTCCCTGTCATCGTCTCCAAGGAGTCCCAGAGACTGGTTGGCTTCGCTCTGCGCAGAGACATCACCATCGCTATAGAGAACGCACGGCGGAAGCAGGAGGGTATCCTGCTGACTTCGCGGGTCTATTTCACGCAGCACGCCCCTACGCTGCCCGCCGACAGCCCGCGGCCCCTCAAGCTGCGCTCCATCCTGGACATGAGCCCCTTCACCGTGACCGACCACACGCCCATGGAGATCGTGGTGGACATCTTCCGCAAGCTGGGCCTCCGCCAGTGTCTGGTGACACACAACGggATTGTATTGGGCATCATCACTAAGAAGAATATATTAGCGCATCTGGAGGAGCTCAAGGAACACACGGAGCCCCTGgCGTCTCCTTGGTATTATCACAAAAAAAGATATCCTTCGTCATATGGCCCAGATGGCCAACCAAGACCCCGACAACATAATGTTCAACTAGTCACCGCCTTCCCGGGTCGTCAAGCTGACGAGGAGGAAAGCGAGGAGGAGGTGGTAAACCTACTGGACGGCCACGGCTCCACCCTATGACGCACAGcccaaccccccccacccctggGACACACCACCCCAAATCCACCTCAATACTAAACCAGAGCCCTCTAGAGGCCACAGGAAGGAAGAGAAGAACAGACTCTAAAAGGACTTTAAAAATGGCTGCTGTGAGGGACGTTTTGGCCCCTAGGTAGCAGCTACTACAGGCTGGGGCATATATACACAAGGAATGCAATTTAAACACACACCTCCATTTACATACAGAAACATACATACATGAGATCAGACTCACTCATACACAGATGCCACACAAGCATGCCACTAGCCGAATTGCACCTCTTTCAAACACACTCTTCATGCTCCTTCGTCCTTGTCCTGTTTCTATTGGTTCACGCTGGCGGACATTGCTGTGAGCCTGAAGCCTGGCTACTGAGGTAAGAGGTCAGAATGATCCGCTAGGACGCGAGGAGCGACCTTCAGACACCTCGACTGCTGATTGGCTGTCAGCCCTGCCAGGCTCCACCCCcactgtgtccctccctccccacaccccGTCCGTCCTCGAAAGCATTGTTTACCTGTGAACTCTCTTTGAGCGAGAGAATGCATGTGTGCGTTTCACCTCCACGTTCCAATCAGGTTGTCATAGTAACCCGAAACTACAAACTCCCACCCTCCCCGCTAAAGGCATCCTCCTGATATTAGACTGGGCGTTGCTCCAAGGTGTAAGTGtgggtgagagagtgtgtgtgtgtgtgagagagagaggaaggaagatcAAGGGTACAAGCAGGATGTACTGGAGTAGTTAgttcatgtctgagtgttgtagttcAAGAACAAAATGTCTATTTCTGATGTATGTGAAAACATTCTGTACAGAAGAGTCCGATACTCATCGGTTACATACCCCCTGTTGAAGTAAAGGGTGGAAAACTGtgtgtggtgggtgggtgtgcgCGTGTGCAATTACCTTTTGATCTGAGCCAGGTAGGCAATATGccatagaggtgtgtgtgtgtgtgtgtgtgcacgcgcataAGTATCAGATGAGAAAAGACTTGTCCGTTTCTCCGACAGTGAAGGTGAGCAGTGTGTATATCAAAATAAATAGGAACACTAACTCAAGGTGAAGTTCTGTTACtggaggagaaaaaaaaagatcATTTTTTTCTTTTCAAACTATTACTAATGCAACTACTTTTAGAGTATTGATATATACATAATCAAGTAACTTTTTACGGCTTGTAATGAAACAAAGTCAAGACTGGAAAaccacttcttttttttttttcaagtgaACAAAATAAATGGATGATTGAGGATGTTGACGGTAATACTGCACAGTAACCATGTCTTAGATCTTTTACTTTGCTTTAATTAAGCTGCCTCATGGTGTGAGAAATGTGTCTTGTATTTTCCACTGGAGCTTAATCTTTTCTtgcatctctcctcctctgcctcgtCGTCAAGTACAACAATTCAACAGGAAATCTTCTTCGCATTTGTAGATTTAAAATCATGAATTGAAAGGACTGAAATAGGAGGTGCATTTCACACAACACTCAATTGACCATACCATGTTTTTTGGGGGAGGTGTGCCAGTAACTCCTTTTAAACTTCAATAAAGTCTCTTTTTGACTTGGGGATATGTAGAAGCACACAGTACACAAAAGGAAATAGTTTTGAACCCTCCATGTGTCAACCTAGACTCATGAAAAAAATAATATAGGATCGTATATCTGATTCACCCTTTAATGTGTGGTTCACCACAGGAAGCAGTGACCTCGATGCGTGCGCCAGTcaggagtcctctctctctctctggctttgtTTCAATGACAAGGTGCATAGAGTAGCACCTTAGCTGCTGAGTGAAGGCtatgggttgtgtcccaaatggcaccctttctctatatagtgcactttttagggaaaagggtgccatttgaggcaCACGTTAAAGCGTGTGGAGGCAGGTGGTGACTTCATGTTTCTCTCTATTACATTGATAGTCttaggtcatattcattaggcaccaaacataataaaacaaacagggagggacttgtccaataagaaacggaTATTTTCCGTTGCCAAATGTTTTTAAAACGTTTTCCGTTGCGTGCCCTAATGCAGGGTTTCCTGGGTCCTCGGTGCACAttgtttttttgccctagcactacacagctgtttcaaataaccaactcatcaagctttgattattttgaATCACCTGTGTAGAGCGAGGGCAAAAACTAAATGTGCACCCAGGGTGGGCCTctggactgagtttgggaaacacctCTCTGATGGATTCAACCCTGCTGTTGGTTGACGAGCGCATCGTCCTTGTTAACCCATGTGGTGTCACCAAACACTGTTCTTTTCATAACTTCATACTGACTTTTATTTATGGTAGATAGTTGTACATTAATTGTATGATTACATTGATGGTTTGATTGTACATTTAAAACAATGTGTAAAAGTtaattgttttaaattaaaattagAAAATTGCAAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991694 lncRNA upstream 181906 41935433 ~ 41937376 (+) True G1739131
TU1991675 lncRNA upstream 192634 41920599 ~ 41926648 (+) True G1739115
TU1991673 lncRNA upstream 195942 41920599 ~ 41923340 (+) False G1739115
TU1991622 lncRNA upstream 320130 41798923 ~ 41799152 (+) True G1739078
TU1991611 lncRNA upstream 331734 41780975 ~ 41787548 (+) True G1739070
TU1991860 lncRNA downstream 43110 42228114 ~ 42228789 (+) True G1739286
TU1991862 lncRNA downstream 44111 42229115 ~ 42229351 (+) True G1739288
TU1991863 lncRNA downstream 44415 42229419 ~ 42229623 (+) True G1739289
TU1991864 lncRNA downstream 46210 42231214 ~ 42231492 (+) True G1739290
TU1991867 lncRNA downstream 53753 42238757 ~ 42239201 (+) True G1739293
trnas-gcu-264 mRNA upstream 28561 42090640 ~ 42090721 (+) True trnas-gcu-264
trnas-gcu-263 mRNA upstream 30532 42088669 ~ 42088750 (+) True trnas-gcu-263
XM_036957880.1 mRNA upstream 66644 42006315 ~ 42052638 (+) False LOC110500448
XM_036957881.1 mRNA upstream 66644 42006315 ~ 42052638 (+) True LOC110500448
XM_021578376.2 mRNA upstream 144096 41942621 ~ 41975186 (+) True LOC110500845
XM_021577840.2 mRNA downstream 28440 42213444 ~ 42220624 (+) False LOC110500456
XM_021577841.2 mRNA downstream 28440 42213444 ~ 42220624 (+) True LOC110500456
NM_001281349.1 mRNA downstream 100125 42285129 ~ 42286862 (+) False cxcl8c
XM_021577843.2 mRNA downstream 169552 42354556 ~ 42370239 (+) False si:dkey-185m8.2
XM_021577844.2 mRNA downstream 222646 42407650 ~ 42410829 (+) False si:ch211-1o7.2
TU1991652 other upstream 221426 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 227915 41888811 ~ 41891367 (+) False G1739103
TU1990529 other upstream 1090146 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 1121962 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1565429 40552011 ~ 40553853 (+) True G1737866
TU1991899 other downstream 100052 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 169573 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 316345 42501349 ~ 42502357 (+) True G1739440
TU1993038 other downstream 1070649 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 1082210 43267214 ~ 43268143 (+) False LOC110500499

Expression Profile