RNA id: XM_036956510.1


Basic Information

Item Value
RNA id XM_036956510.1
length 1455
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC118942801
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42120391 ~ 42132326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCGTGCAGCTACATAtcaaggcaaagagagagagagaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagagaaagagagagagagaggggcaaagagagagagagaaaggcaaagagagagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagaggcaaagagagagagagagaggcaaagagagagggagagaggcaaagagagagggagaaaggcaaagagagagagagaaaggcaaagagagaggcagagagagagagaaaggcaaagagagagaggcaaagagagagagagaggtaaagagagagaggcggagagagaggcaaagagagagagagagagagaggcaaagggagagagagagagaggcaaagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagagaggcaaagagagagagaggcaaagagagagagagagagagaggcaaagagagagagaggcaaagagagagagagaggcaaagagagagagaggcaaagagagggagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagagagaggcaaagagagagagagagaggcaaagagtggcaaagagagagagtggcaaagagagagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagagaggcagagagagagagaggcaaagagagagagagagagaggcaaagagagagaggcggagagagaggcaaagagagagagagggagagagagaggcaaagagagagaggcggagagagaggcaaagagagagagagggagagagagagagagagagagaggcaaagagagagagagagaggcaaagagagagaggcaaagagCAGCTCAAGTTCAACAGGGGATACCACAGAAACAGCTACAACAGCATCTCCAGTGCCCAGCCCTGTGAtctgagagtgtgtttgtgttcccACGCAGGGCACTGCCTGCGTAGCACGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991694 lncRNA upstream 183015 41935433 ~ 41937376 (+) True G1739131
TU1991675 lncRNA upstream 193743 41920599 ~ 41926648 (+) True G1739115
TU1991673 lncRNA upstream 197051 41920599 ~ 41923340 (+) False G1739115
TU1991622 lncRNA upstream 321239 41798923 ~ 41799152 (+) True G1739078
TU1991611 lncRNA upstream 332843 41780975 ~ 41787548 (+) True G1739070
TU1991631 lncRNA downstream 10027 42142353 ~ 42143265 (+) True G1739084
TU1991860 lncRNA downstream 95788 42228114 ~ 42228789 (+) True G1739286
TU1991862 lncRNA downstream 96789 42229115 ~ 42229351 (+) True G1739288
TU1991863 lncRNA downstream 97093 42229419 ~ 42229623 (+) True G1739289
TU1991864 lncRNA downstream 98888 42231214 ~ 42231492 (+) True G1739290
trnas-gcu-264 mRNA upstream 29670 42090640 ~ 42090721 (+) True trnas-gcu-264
trnas-gcu-263 mRNA upstream 31641 42088669 ~ 42088750 (+) True trnas-gcu-263
XM_036957880.1 mRNA upstream 67753 42006315 ~ 42052638 (+) False LOC110500448
XM_036957881.1 mRNA upstream 67753 42006315 ~ 42052638 (+) True LOC110500448
XM_021578376.2 mRNA upstream 145205 41942621 ~ 41975186 (+) True LOC110500845
XM_036957875.1 mRNA downstream 21243 42153569 ~ 42185004 (+) False LOC110500450
XM_036957879.1 mRNA downstream 21243 42153569 ~ 42185004 (+) True LOC110500450
XM_021577840.2 mRNA downstream 81118 42213444 ~ 42220624 (+) False LOC110500456
XM_021577841.2 mRNA downstream 81118 42213444 ~ 42220624 (+) True LOC110500456
NM_001281349.1 mRNA downstream 152803 42285129 ~ 42286862 (+) False cxcl8c
TU1991652 other upstream 222535 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 229024 41888811 ~ 41891367 (+) False G1739103
TU1990529 other upstream 1091255 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 1123071 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1566538 40552011 ~ 40553853 (+) True G1737866
TU1991899 other downstream 152730 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 222251 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 369023 42501349 ~ 42502357 (+) True G1739440
TU1993038 other downstream 1123327 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 1134888 43267214 ~ 43268143 (+) False LOC110500499

Expression Profile