RNA id: XM_021577841.2


Basic Information

Item Value
RNA id XM_021577841.2
length 2029
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110500456
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42213444 ~ 42220624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTGTCATGTTTATACAAACAACGGGGAAATGCGTTGAGGGAAAGCAGCTTCATCCTTACCTTGATTCGTGAGCAACTAGCGTTCATTTATCTAAAAGGCAGCCAGCTAACTCTAGTTAATTATTACAGCTAACGCTAGCCAGCTAAGTTAGCTAACTTTAGTCAGTTGTATTTTGTCAAGCGACAACACATGTTGGGCTTGCAAATGCTTCATCAAAGTAGACTATTTGCTACTTATCACGCTATCAAAGCACATGACAACTCTTGAGTAGGTTTGGTCGTCCCGTGATCGCATTGAGTAGCTAGATAGTTACAGTAAACATTTGGTTTACCTAGCGAACAGTTGCTGACGACTCTTCCGTAGATTGCTGACGACTCTTCCGTAGATCGAGCAAGGCCAACTTGGTAGGATGTAGACTGGCAGAACCTGTTTTCTGGTTTCAATGGGGAAAAGGAAAGACATGATCCACCCAAGGTTTATTTTAGGTGATGGAGGCCACGTGGGCTTACAAAGCCTGCATAGGCGGAAACACAAAAAACACAAGAAGAAGCATCACCGCGACAACGGACACAGCTCCTACTCCGAGGCCCTGGAGTCAGACTCCGGGATTGTGTTCAAGCCCCCCACACAGCTCAGACTCAAGATCAAACTGGGAGGCCAAACGCTTGGGACAAAAAGTGTGCCAACGTTCACTGTGGTCCCTGGTGTAGCCCATTCCCAGTGTCCTCTGATGATCGTGGACGACGATGACGACTCTGATGATGATAAACCTTCTGAGGGTGTTCCACTTGAGCAGTACCGGGCCTGGCTTGATGAGGACAGTAACCTGGACCCGTCTCCTCTGCCAGACATGGACTCAGACTCCCTGGGTAAGCCGGTGGACGAGGAGGAGAAGTGGCTGGACGCCCTGGAGAAAGGAGAGCTGGACGACAACGGAGAGTTGAAGAAGGAGATCGATGAGTCCCTGCTCACAGCCAGACAGAAAGCCCTCCTGCACAAGCAACAGAACCAGCCTCTCCTGGAGCTGCCCATGGGCTACAAGGAGAAGGAGATGACCACCGAGATGAtgcagaagagagaggagtgtgcCCGCAAGAGGCGCCTGCAGGCGGCCAAGAAGGCAGAGGAGGACAAGAACCAGACCATTGAGAGGCTCACCAAGACCTCCAAGGCCAAGATCAAGAGTATGAGGGAGCGTAAGTCCAAGCAGGCCCAGTGTCCCATGGTCCGCTACTATGACTCAGCCCAGGGAATGGAGATTTCGTTCCCAACAGGGGTGCTTGCCCCGACCCCTGCTTCCCTGTGCCCCCCTCCCCTGGCACCGGTAGGCTGCGGGATAAACGGGTGCAGTAATCTGAAGAGGTACTCGTGCTCCAAGACTGGGATCCCTCTCTGTAGTCTGGACTGCTACAAGAAGAATCTGGTCCTTGTTGTGGAGAGTGCTGCTTGAATTTGACCGTTTTCAAATGTTTTGGCTTGCTGGCAGTTTAGACTCTTGGGCTAAATGGACAATGtgtcattttttttgtattttgagaGATTATGaaaaggcttttttttttttctctctctttgtgtgatGTATACTATCAAAAGAGTTCCAACCAATGCATCAGTCAGTCAATTTAGTCCTGATACTAGGATGACATAAGGTAGGCTACAGCCACACCAGGCCCTATCAAACAGCAAGCATTTATTTCTAGATCCTTAGTTTGTGGAAGTCCACATAATGTAGATTGAATAAGACTTTAAGAAGGCAAGCTTATTTTTGTAACAGCAGGACAGAAATAACAGCGCTGTTTGCCTGATGATCATGAAGGACTTTCATTTGTATAAATATATGAATGGTTTCGTATTAATTTTGGCAAGCATAACAGCAGTAACATGTTTGATAAATTGAGAAAATGACCCAGAGGAAACCAAAATATGTTTTTCTTTTAATTGTCACAAATGTGCATTTGTATCACAAATTATTACATTTCCATACAAAATACTGTACATCTTAAATAAAATATCATAACACTTA

Function

GO:

id name namespace
GO:0031011 Ino80 complex cellular_component

KEGG:

id description
K11666 INO80B, ZNHIT4, PAPA1; INO80 complex subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991631 lncRNA upstream 70179 42142353 ~ 42143265 (+) True G1739084
TU1991816 lncRNA upstream 89458 42122390 ~ 42123986 (+) True G1739245
TU1991640 lncRNA upstream 92964 42113316 ~ 42120480 (+) True G1739093
TU1991694 lncRNA upstream 276068 41935433 ~ 41937376 (+) True G1739131
TU1991675 lncRNA upstream 286796 41920599 ~ 41926648 (+) True G1739115
TU1991860 lncRNA downstream 7490 42228114 ~ 42228789 (+) True G1739286
TU1991862 lncRNA downstream 8491 42229115 ~ 42229351 (+) True G1739288
TU1991863 lncRNA downstream 8795 42229419 ~ 42229623 (+) True G1739289
TU1991864 lncRNA downstream 10590 42231214 ~ 42231492 (+) True G1739290
TU1991867 lncRNA downstream 18133 42238757 ~ 42239201 (+) True G1739293
XM_036957878.1 mRNA upstream 28440 42119282 ~ 42185004 (+) False LOC110500450
NM_001281349.1 mRNA downstream 64505 42285129 ~ 42286862 (+) False cxcl8c
XM_021577843.2 mRNA downstream 133932 42354556 ~ 42370239 (+) False si:dkey-185m8.2
XM_021577844.2 mRNA downstream 187026 42407650 ~ 42410829 (+) False si:ch211-1o7.2
XM_021577845.2 mRNA downstream 187307 42407931 ~ 42410829 (+) True si:ch211-1o7.2
XR_002470111.2 mRNA downstream 252643 42473267 ~ 42482530 (+) False LOC110500464
TU1991652 other upstream 315588 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 322077 41888811 ~ 41891367 (+) False G1739103
TU1990529 other upstream 1184308 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 1216124 40993155 ~ 40997320 (+) True G1738057
TU1990244 other upstream 1659591 40552011 ~ 40553853 (+) True G1737866
TU1991899 other downstream 64432 42285056 ~ 42288500 (+) True cxcl8c
TU1991912 other downstream 133953 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1992021 other downstream 280725 42501349 ~ 42502357 (+) True G1739440
TU1993038 other downstream 1035029 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 1046590 43267214 ~ 43268143 (+) False LOC110500499

Expression Profile